BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4175.p
         (268 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981681|ref|YP_001351726.1| ABC transporter substrate bindi...    77   1e-15

>gi|152981681|ref|YP_001351726.1| ABC transporter substrate binding
           protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score = 76.6 bits (187), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 99/224 (44%), Gaps = 6/224 (2%)

Query: 45  VYVVGVESAYAPFSSENEQKDVVGFDIDVMKALAKKIGIQVKFVPTPFEGFFNFLAQGDR 104
           V  V V   + PF S        G DIDV   +AKK+G++V+ +P        +L     
Sbjct: 34  VLRVAVPQDFPPFGSVTTDMTPQGLDIDVATLIAKKLGVKVELIPVTSANRIPYLQTKKV 93

Query: 105 DLLISAITITDERKKSVAFSDPYFVATQTIALPAADTKVNKMEDLKPLTVGTQSATSGDE 164
           DL+IS++    ER+K + FS  Y      +  P AD KV    DL   T+G     S ++
Sbjct: 94  DLVISSMGKNPEREKVIDFSAAYAPFFNGVFGP-ADQKVAAPADLAGKTIGVTRG-SVED 151

Query: 165 LVQQVLGKNSAKIKRFDSTPLALKELESGGVDAVVADEPVVKNYIANNPNSKLRT-VTDP 223
           L    +   SA IKR++     +    S  V  V     +    IA NP  K  T     
Sbjct: 152 LELSKIAPESATIKRYEDNNGTISSFLSNQVQLVATGNVIAAAIIAKNPPKKPETKFLIK 211

Query: 224 NFPKEDYGIAVRKDDPELLAKINKGLAEMKADGSFAAISAQYFG 267
           N P     I + K + +LL K+N  +A+ K DGS   ++ ++ G
Sbjct: 212 NSP---CSIGLNKGEEKLLEKVNAIIAQAKKDGSLNTLTEKWLG 252


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 572,247
Number of extensions: 22103
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 186
Effective length of database: 917,867
Effective search space: 170723262
Effective search space used: 170723262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)