BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4174.p (690 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980889|ref|YP_001355282.1| ATP-dependent DNA helicase Rep ... 1144 0.0 gi|152981250|ref|YP_001352009.1| DNA helicase II / ATP-dependent... 330 2e-91 gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0625 [... 80 3e-16 >gi|152980889|ref|YP_001355282.1| ATP-dependent DNA helicase Rep [Janthinobacterium sp. Marseille] Length = 686 Score = 1144 bits (2958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/683 (79%), Positives = 609/683 (89%), Gaps = 6/683 (0%) Query: 2 SAPSFGLNKPQSEAVHYMAGPCLVLAGAGSGKTRVITQKIAHLIENCGYESRNIAALTFT 61 ++ + GLN PQ +A+ YM GPCLVLAGAGSGKTRVIT KIA LIE GYE+RNIAALTFT Sbjct: 6 NSATHGLNAPQRDAIKYMDGPCLVLAGAGSGKTRVITTKIASLIEEHGYEARNIAALTFT 65 Query: 62 NKAALEMQERIAKLLKDPKQAKHLTVSTFHSLGVKILRQESKHLGLKDRFSIMDSDDCFS 121 NKAALEMQERIAKLLK+PKQAK LTVSTFHSLGVKILRQE+K LGLKDRFSIMDSDDCFS Sbjct: 66 NKAALEMQERIAKLLKEPKQAKQLTVSTFHSLGVKILRQEAKELGLKDRFSIMDSDDCFS 125 Query: 122 LVQELAVTTDKAIIRGIQNSISLWKNGLVDPDLAEKNARTEDEAQAARIYRSYVATLKAY 181 LVQ+LAVTTDK +IR IQ ++SLWKNGL+DPD A A+ EDEAQAARIYRSYVATL AY Sbjct: 126 LVQDLAVTTDKQLIRRIQTAMSLWKNGLIDPDTALNQAKDEDEAQAARIYRSYVATLSAY 185 Query: 182 QAVDFDDLIRLPVELFRSNEEVRDRWQRKLRYLLIDEYQDTNTCQYELVKLLVTGVGKKP 241 QAVDFDDLIRLPVELFR+NE VRD+WQR+LRYLL+DEYQDTNTCQYELVKLLVTGVGKKP Sbjct: 186 QAVDFDDLIRLPVELFRTNETVRDKWQRRLRYLLVDEYQDTNTCQYELVKLLVTGVGKKP 245 Query: 242 MFTAVGDDDQAIYAWRGATIENLKLLGVDFPNLHLIKLEQNYRSSTRILQAANAVISNNP 301 MFTAVGDDDQAIYAWRGATIENLK L VDFP+L ++KLEQNYRSSTRILQAAN+VISNNP Sbjct: 246 MFTAVGDDDQAIYAWRGATIENLKQLQVDFPDLKIVKLEQNYRSSTRILQAANSVISNNP 305 Query: 302 KLFDKTLWSEHGLGDPITVMAMDDEEAEADQIAITLSAHRFERRAKFADYAILYRGNHQA 361 KLF+K+LWSEHGLGDP+ VM M D++ EA+QIAI LSAHRFERRAKF+DYAILYRGNHQA Sbjct: 306 KLFEKSLWSEHGLGDPVKVMGMQDDDQEAEQIAIMLSAHRFERRAKFSDYAILYRGNHQA 365 Query: 362 RILEKSLRRERIPYVMSGGQSYFDRAEIKDIIAYLRLIANQDDDPAFIRAVTTPRRGVGQ 421 R++E++LR+ERIPY +SGGQS+FDRAEIKDII+YLRLIANQDDDPAFIRAVTTP+RGVGQ Sbjct: 366 RVIEQALRKERIPYTISGGQSFFDRAEIKDIISYLRLIANQDDDPAFIRAVTTPKRGVGQ 425 Query: 422 ATLEVLGTLAGQWQCSLFEAVYKGGLEDKLTDRQLLPLRKFCDFINALESRATRPGPSGS 481 +TLE LG AGQWQCSLFEAV+KGGLE KL DRQL PLR+F +FIN LE A R G + S Sbjct: 426 STLEALGAFAGQWQCSLFEAVFKGGLESKLADRQLTPLREFGNFINNLERHAHREGHAAS 485 Query: 482 GAEAGRVLDDMMEAINYEFYLYDSFEERAAQARWQNVVDFINWLKERACGGRDGEGEEKN 541 +LDDMM+ INYE YLYD+F++R AQ++WQNV+DF WLKE+ GG++G EK+ Sbjct: 486 ------LLDDMMKEINYEAYLYDNFDDRQAQSKWQNVIDFTAWLKEKGSGGKEGNDPEKS 539 Query: 542 LLEITQMVALMSMLEGRDEEQDAVRMSTLHASKGLEFPHVFLVGVEEGILPHKGDPDTPP 601 LL++TQMVALM+MLEG+DEE DAVRMSTLHASKGLEFPHVFLVGVEEGILPHKGDPD P Sbjct: 540 LLDLTQMVALMTMLEGKDEEPDAVRMSTLHASKGLEFPHVFLVGVEEGILPHKGDPDAPV 599 Query: 602 EAAAARVEEERRLMYVGITRAQRSLHLSWCKRRKRAKEVIECQISRFVKEMRLDEGEAVP 661 + AR+EEERRLMYVGITRAQRSLH+SWCK+RKRA+E + C ISRF+KEM+LDEG+AVP Sbjct: 600 DTLGARIEEERRLMYVGITRAQRSLHVSWCKKRKRAREHVHCDISRFIKEMKLDEGDAVP 659 Query: 662 QESEKITPQARLANLKALLQKPR 684 E E ITPQ RLANLKALLQKP+ Sbjct: 660 TEDEVITPQNRLANLKALLQKPK 682 >gi|152981250|ref|YP_001352009.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium sp. Marseille] Length = 760 Score = 330 bits (846), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 234/673 (34%), Positives = 347/673 (51%), Gaps = 41/673 (6%) Query: 8 LNKPQSEAVHYMAGPCLVLAGAGSGKTRVITQKIAHLIENCGYESRNIAALTFTNKAALE 67 LN Q AV A P L+LAGAGSGKTRV+T +IA LI+ I A+TFTNKAA E Sbjct: 8 LNPEQLAAVTLPAQPALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTFTNKAAKE 67 Query: 68 MQERIAKLLKDPKQAKHLTVSTFHSLGVKILRQESKHLGLKDRFSIMDSDDCFSLVQELA 127 M R++ ++ P + + + TFH L ++LR + L F I+DS D S+++ L Sbjct: 68 MMTRLSAMM--PINTRGMWIGTFHGLCNRLLRAHYRDAALPQTFQILDSQDQLSMIKRLL 125 Query: 128 VTTDKAIIRGIQNSISLWKNGLVDPDLAEKNARTEDEA--QAARIYRSYVATLKAYQAVD 185 + + ++ + NG D L D+ + +Y Y + VD Sbjct: 126 KANNIDDEKYPPRNLMYFINGAKDQGLRASAVEAFDDYNRKMVELYEIYDQQCQREGVVD 185 Query: 186 FDDLIRLPVELFRSNEEVRDRWQRKLRYLLIDEYQDTNTCQYELVKLLVTGVGKKPMFTA 245 F +L+ EL N+ +R+ +Q + R++L+DE+QDTN QY +KL+ G + A Sbjct: 186 FAELLLRTYELLSRNQPLREHYQSRFRHILVDEFQDTNDLQYNWLKLMA---GTQGAVFA 242 Query: 246 VGDDDQAIYAWRGATIENLKLLGVDFPNLHLIKLEQNYRSSTRILQAANAVISNNPKLFD 305 VGDDDQ+IYA+RGA + N+ +F +LIKLEQNYRS IL AN +I+NN K Sbjct: 243 VGDDDQSIYAFRGANVGNMSAFEREFKVENLIKLEQNYRSHGHILDTANTLIANNSKRLG 302 Query: 306 KTLWSEHGLGDPITVMAMDDEEAEADQIAITLSAHRFERRAKFADYAILYRGNHQARILE 365 K L ++ G G+ + + + EA I I + A +D A+LYR N Q+R++E Sbjct: 303 KNLHTDAGHGELVRIYEATSDLQEAQWI-IEEAKSLIAEGAARSDIAVLYRSNAQSRVIE 361 Query: 366 KSLRRERIPYVMSGGQSYFDRAEIKDIIAYLRLIANQDDDPAFIRAVTTPRRGVGQATLE 425 +L IPY + GGQ +F+RAE+K IAYL+L+ N +D AF+R V P RG+G +LE Sbjct: 362 HALFSSGIPYRVYGGQRFFERAEVKHAIAYLQLMDNPHNDSAFLRVVNFPTRGIGARSLE 421 Query: 426 VLGTLAGQWQCSLFEAV-YKGG------------LEDKLTDRQLLPLRKFCDFINALESR 472 L A Q+ SL+ AV Y G +E + Q LPL + + Sbjct: 422 QLQDAAKQYGISLYAAVPYVAGKAGTSLGAFIKLIEAARFETQNLPLPEMVQVVIDASGL 481 Query: 473 ATRPGPSGSGAEAGRVLDDMMEAINYEFYLYDSFEERAAQARWQNVVDFINWLKERACGG 532 T GA+ L+ ++ A L+ S EE Q + + A Sbjct: 482 ITHYQNEKEGADRIENLEQVVSAAT----LFVS-EEGFGQDAPALLGPTSQQMAGPAIVT 536 Query: 533 RDG----EGEEKNLLEITQMVALMSM--LEGRDEE----QDAVRMSTLHASKGLEFPHVF 582 +DG + + + ++ + A +S LE D + QDA+++ T+H++KGLEF VF Sbjct: 537 QDGVEILDADAPLPVVMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVF 596 Query: 583 LVGVEEGILPHKGDPDTPPEAAAARVEEERRLMYVGITRAQRSLHLSWCKRRKRAKEVIE 642 + G+EEG+ PH+ + VEEERRLMYV ITRA+R L++S+ + R ++ Sbjct: 597 ITGLEEGLFPHENS-----QKEEDGVEEERRLMYVAITRAKRRLYISFSQTRMLHGQMRF 651 Query: 643 CQISRFVKEMRLD 655 SRF EM D Sbjct: 652 NLKSRFFDEMPED 664 >gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacterium sp. Marseille] Length = 1083 Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 138/576 (23%), Positives = 215/576 (37%), Gaps = 128/576 (22%) Query: 176 ATLKAYQAV-------DFDDLIRLPVELFRSNEE----VRDRWQRKLRYLLIDEYQDTNT 224 A L+ YQAV DF DL L +NEE ++ R + +++L+DE+QDTN Sbjct: 360 AYLEIYQAVKAEQRVFDFADLEWQAYRLL-TNEEHAAYLQSRLDARYKHVLLDEFQDTNP 418 Query: 225 CQYELVKLLVTGVGK---KPMFTAVGDDDQAIYAWR-------GATIENLKLLGVDFPNL 274 Q+ +V+ + G +P VGD Q+IY +R A E L G DF Sbjct: 419 LQWSIVQAWLKAYGNETDRPSMFVVGDPKQSIYRFRRAEPRVFSAAREVLVAQGADF--- 475 Query: 275 HLIKLEQNYRSSTRILQAANAVISNNP-----------------------KLFDKTLWSE 311 ++ Q R++ I+ N NP + +K +WS Sbjct: 476 --LRTNQTRRNARGIVDVLNESFRANPIYTAQTTLSNEAGAVWQLPLVQQEKSEKVVWSP 533 Query: 312 HGLGDPITVMAMDDEEA----EADQIA-ITLSAHRFERRAKFADYAILYRGNHQARILEK 366 + DP+T ++E+A E +A L A K++D +L + E+ Sbjct: 534 ANMRDPLTEPREEEEDARRLQEGRAVAQAILRAREVTPGTKWSDVMLLVKKRTHLSAYER 593 Query: 367 SLRRERIPYVMSGGQSYFDRAEIKDIIAYLRLIANQDDDPAFIRAVTTPRRGVGQATLEV 426 +LR IP+ + E+ D+IA L + D+ A + +P G L Sbjct: 594 ALREAGIPFASDRRGGLLESLEVADLIALLTFLITPHDNLALAHVLKSPIMGATDNDLIA 653 Query: 427 LGTLAGQ-WQCSLFEAVYKGG--------LEDKLTDRQLLPLRKFCDFINALESRATRPG 477 L A + W L +A LE L LP+ D I R Sbjct: 654 LALRAEKTWWGRLHQAELNSEVLQRAVSLLEKWLELAARLPVHDLLDRILHEGDVVARYA 713 Query: 478 PSGSGAEAGRVLDDMMEAINYEFYLYDSFEERAAQ---ARWQNVVDFINWLKERACGGRD 534 + S G+VL ++ ++F E A R+ ++ FI+ L+ Sbjct: 714 QAASPLVRGQVLANI-----------EAFTELALNLDAGRYPSLPKFIDALRRLQKSADS 762 Query: 535 GEGEEKNLLEITQMVALMSMLEGRDEEQDAVRMSTLHASKGLEFPHVFLVGVEE------ 588 +E + D DA R+ T+H +KGLE V L+ Sbjct: 763 DAPDEAEI----------------DASLDAARILTIHGAKGLEADIVVLLDANHSDPARD 806 Query: 589 --GILPH-KGDPDTP---------PEAAAAR-----------VEEERRLMYVGITRAQRS 625 G+L K + D P E AAR +E+ L+YV TRA++ Sbjct: 807 DYGVLCEWKQEADAPNHFSVFGRQAERGAARDYLFAEEEQLKTQEDWNLLYVATTRAKKL 866 Query: 626 LHLSWCKRRKRAKE---VIECQISRF--VKEMRLDE 656 L +S + A E C +RF +E LD+ Sbjct: 867 LIVSGVADARSASENGVADGCWYARFQGAEEPELDQ 902 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,534,372 Number of extensions: 61322 Number of successful extensions: 170 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 4 Length of query: 690 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 600 Effective length of database: 888,291 Effective search space: 532974600 Effective search space used: 532974600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)