BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4171.p (301 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 114 8e-27 gi|152983122|ref|YP_001354734.1| LysR family transcriptional reg... 109 2e-25 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 89 4e-19 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 83 2e-17 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 80 2e-16 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 114 bits (285), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 147/290 (50%), Gaps = 6/290 (2%) Query: 4 TLRQLQIFLAVAQSGSTTAAAGMVALSQSAASASLNELESLLGVQLFDRVGKRLVLNDSG 63 TLRQL++F VA+ S + AA + L+Q A S + +LE G+ LF+++GK++ L G Sbjct: 5 TLRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYLTPGG 64 Query: 64 RQLLPQARHMLDAAQTIE---RQFSDPAAGSELHLGASTTIGSYLLPAMIAAYRRIHAGA 120 +LL +R ++ Q E QF G +L++ A + G Y P ++ + R H G Sbjct: 65 SELLHYSRTIIQQFQEAEDAMTQFKG-ITGGKLNV-AVISAGDYFFPRLLVEFARSHQGV 122 Query: 121 RVRALVANTADIVEAVVNFEVDAGLIEGPCHADDVRVEPWMTDELIVVAAPTHPIVAQAR 180 + V N ++ + + D ++ P D E + ++VAAP HP+V+Q + Sbjct: 123 TLNLSVHNREGLLNQMTSNLTDIAIMVRPPTDMDTINEAFAPHPYVIVAAPDHPLVSQ-K 181 Query: 181 KITLKMLRQADWLLREAGSGTREAVEHALIPYLHHLPSSFEFGNSEAIKRATAEGLGISC 240 I + L Q +++RE GS T ++E ++ + + E ++E IK+A G+G+S Sbjct: 182 NIPMSRLMQEPFVVREKGSDTWHSMEDGFGDRINDINVAMEIRSTETIKQAVIAGMGVSF 241 Query: 241 LSRSVVEDLIESGKLVELETPLPTLRRHFYMVVSRHRAPSPSLAALLSFC 290 LS + +++G L L+ + ++Y+V +++ P A +F Sbjct: 242 LSAHTISLELQAGSLAVLDVEGFPVMLNWYIVHRKNKRLPPVAQAFKNFL 291 >gi|152983122|ref|YP_001354734.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 285 Score = 109 bits (273), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/291 (28%), Positives = 142/291 (48%), Gaps = 8/291 (2%) Query: 3 ITLRQLQIFLAVAQSGSTTAAAGMVALSQSAASASLNELESLLGVQLFDRVGKRLVLNDS 62 I L +L+ FL VA+ G AA LSQS + + +LE L L DR L Sbjct: 2 IDLEKLETFLTVAKHGGFRGAAMHRGLSQSTLTQHIKQLERSLNAVLIDRSNAVSKLTTE 61 Query: 63 GRQLLPQARHMLDAAQTIERQFSDPAAGSELHLGASTTIGSYLLPAMIAAYRRIHAGARV 122 G+ LLP A+ ++D I ++ SD S L +GAS+ +G YLL + ++R +G ++ Sbjct: 62 GQALLPYAQMLID----ISKKASDLFRRSSLTIGASSNVGIYLLQPYLKEFQR-RSGVKL 116 Query: 123 RALVANTADIVEAVVNFEVDAGLIEGPCHADDVRVEPWMTDELIVVAAPTHPIVAQARKI 182 ++A+ I + + E+D ++E W ++EL+++ +HP ++ I Sbjct: 117 DIVIADNTSIADKLQRLEIDVAVMEWWDSRSGFTASIWRSEELVLIVPTSHPWAGRS-TI 175 Query: 183 TLKMLRQADWLLREAGSGTREAVEHALIPYLHHLPSSFEFGNSEAIKRATAEGLGISCLS 242 L+ L + + E G+GT +E L + + + G++EA+K A GLG+S + Sbjct: 176 QLEELDGIELIGGEKGTGTGRIIERMLGARDLRINVAMQLGSTEAVKHAVKAGLGVSVVL 235 Query: 243 RSVVEDLIESGKLVELETPLPTLRRHFYMVVSRHRAPSPSL-AALLSFCRQ 292 V D + S + L TL++ Y V+ R+ + S+ + + F RQ Sbjct: 236 AGAVTDEVLSRQFNVLRIDGDTLQKDIY-VIHRNCTSADSVESKFVDFLRQ 285 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 88.6 bits (218), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 5/209 (2%) Query: 5 LRQLQIFLAVAQSGSTTAAAGMVALSQSAASASLNELESLLGVQLFDRVGKRLVLNDSGR 64 LR L+ FLA AQS S T A+ + ++Q S + ++E LG+QLFDRVG+ + L +G Sbjct: 3 LRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTAGE 62 Query: 65 QLLPQARHML---DAAQTIERQFSDPAAGSELHLGASTTIGSYLLPAMIAAYRRIHAGAR 121 A+ L DA + + G + G ++ G++ LP ++A + +++ G + Sbjct: 63 LFQVYAKRALLEVDAGLDALNELENLKHG-RVTFGVLSSFGTFHLPPILADFNKVYPGIK 121 Query: 122 VRALVANTADIVEAVVNFEVDAGLIEGPCHADDVRVEPWMTDELIVVAAPTHPIVAQARK 181 + L + +I E +++ ++ G+ P + + VEP T L +V HP+V A Sbjct: 122 ITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHPLVGSA-G 180 Query: 182 ITLKMLRQADWLLREAGSGTREAVEHALI 210 ITL L + + ++ +R+ ++ L+ Sbjct: 181 ITLNELNEHELVMLSDEYNSRKMMDAILL 209 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 17/259 (6%) Query: 3 ITLRQLQIFLAVAQSGSTTAAAGMVALSQSAASASLNELESLLGVQLFDRVGKRLVLNDS 62 +TL +L+ +AVA+ AA ++Q S ++ +LE LGV LF+R G + + Sbjct: 17 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 76 Query: 63 GRQLLPQARHMLD---AAQTIERQFSDPAAGSELHLGASTTIGSYLLPAMIAA-YRRIHA 118 G Q++ QA +L+ A + I +Q DP G LG TI YLLP ++ R+ Sbjct: 77 GAQIVAQAERVLEQTAAIKEIAKQNKDPLVGP-FRLGIIYTIAPYLLPPLVKTIIERVPQ 135 Query: 119 GARVRALVAN-TADIVEAVVNFEVDAGLIEGPCHADDVRVEPWMTDELIVVAAPTHPIVA 177 V L N T ++E + E+DA ++ P + V+P + DE VVA P H A Sbjct: 136 MPLV--LQENFTVKLLELLRQGELDAAIVALPFPDQGLLVQP-VYDEPFVVAVPKHHKWA 192 Query: 178 QARKITLKMLRQADWLLREAGSGTREAVEHALIPYLHHLPSS-------FEFGNSEAIKR 230 ++ L+ LL G R+ V + P + +S FE + E I+ Sbjct: 193 NRDSVSTDDLKSETMLLLGNGHCFRDQVLE-VCPEMSRFSTSGDGIARTFEGSSLETIRH 251 Query: 231 ATAEGLGISCLSRSVVEDL 249 A G+GI+ L ++ + D+ Sbjct: 252 MVASGIGITVLPQASIPDM 270 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 6/209 (2%) Query: 3 ITLRQLQIFLAVAQSGSTTAAAGMVALSQSAASASLNELESLLGVQLFDRVGKRLVLNDS 62 I LR L+ F+ VA+ G T AA + + Q S + LE LGV LF R+ + + L +S Sbjct: 4 IDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTES 63 Query: 63 GRQLLPQARHMLDAAQTIERQFSDPAAGSELHLGASTTIGSYL---LPAMIAAYRRIHAG 119 G+ LL AR +L+ T + G L T + L +PA+I A+R+ G Sbjct: 64 GQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSPG 123 Query: 120 ARVRALVANTADIVEAVVNFEVDAGLIEGPC-HADDVRVEPWMTDELIVVAAPTHPIVAQ 178 + +NT ++VE + + +D I P A +++E + +E+IV TH + + Sbjct: 124 VIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLAQR 183 Query: 179 ARKITLKMLRQADWLL--REAGSGTREAV 205 + + L L + D++L R +G G ++V Sbjct: 184 RKSLPLTALAEDDFILNRRPSGPGLYDSV 212 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.132 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 640,977 Number of extensions: 25163 Number of successful extensions: 146 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 29 Length of query: 301 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 218 Effective length of database: 914,170 Effective search space: 199289060 Effective search space used: 199289060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)