BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4164.p
         (533 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980973|ref|YP_001351728.1| alkyl hydroperoxide reductase s...   821   0.0  
gi|152980722|ref|YP_001352843.1| thioredoxin reductase (NADPH) [...   162   5e-41

>gi|152980973|ref|YP_001351728.1| alkyl hydroperoxide reductase
           subunit F [Janthinobacterium sp. Marseille]
          Length = 531

 Score =  821 bits (2121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/534 (77%), Positives = 469/534 (87%), Gaps = 4/534 (0%)

Query: 1   MLDANLKTQLKAYLEKVSHPIEIVASLDDGAKSREMQELLQEIVLLSDRISLVEHRGTSK 60
           MLDANLKTQL AYLEK+  PIEIVASLD G KSRE+QELLQEIV+LSD+I+L+E   T  
Sbjct: 1   MLDANLKTQLAAYLEKIVQPIEIVASLDGGDKSRELQELLQEIVVLSDKITLIER--TDD 58

Query: 61  DARTPSFKLHRPGTNISVEFAAIPMGHEFTSLVLALLQVGGHPIKLDDKVIEQIRNLDGD 120
           + R PSF + RP  +  ++FAAIPMGHEFTSLVLALLQ GGHP+KL+D V+EQIRNLDGD
Sbjct: 59  NERKPSFVIKRPDAHAGIQFAAIPMGHEFTSLVLALLQTGGHPLKLEDSVVEQIRNLDGD 118

Query: 121 YRFETYVSLTCQNCPEVVQALNVMSIINPRIQSVTIDGALFQGEVEQRQIMAVPTVYMNG 180
           Y FETY+SL+C NCPEVVQA NVM++INPRI+++TIDG LFQ EV++R+IMAVPT +MNG
Sbjct: 119 YTFETYMSLSCHNCPEVVQAFNVMALINPRIRAITIDGGLFQDEVKEREIMAVPTTFMNG 178

Query: 181 EVFGQGRTGVEEILAKLDTGAAARKGEELSAQAPYDVLIVGGGPAGAAAAIYAARKGIRT 240
           + F  GR  +E+ILAKLDTG   RK EELSA+APYDVLIVGGGPAGAAAAIYAARKGIRT
Sbjct: 179 QPFESGRVSIEQILAKLDTGGNKRKAEELSAKAPYDVLIVGGGPAGAAAAIYAARKGIRT 238

Query: 241 GVVAERFGGQVLDTLAIENFVSVQETEGPQFATALEQHVRAYDVDIMNVQRAEALVPGDK 300
           GVVAERFGGQVLDTL+IENFVSVQET+GP+FA ALEQHVR+Y+VDIMN+Q A  L+PG K
Sbjct: 239 GVVAERFGGQVLDTLSIENFVSVQETDGPKFAVALEQHVRSYEVDIMNIQTASELIPG-K 297

Query: 301 LIEVKLANGGVLKGKTVILSTGARWRNVNVPGEQEYKNKGVAYCPHCDGPLFKGKRVSVI 360
           LIEVKL +GG LK KTVILSTGARW+ +NVPGE EY+NKGVAYCPHCDGPLFKGKRV+VI
Sbjct: 298 LIEVKLKDGGSLKSKTVILSTGARWKTINVPGENEYRNKGVAYCPHCDGPLFKGKRVAVI 357

Query: 361 GGGNSGVEAAIDLAGIVAHVTLIEFAAELKADAVLVRKLKSLPNVTIVTSAQTTEITGDG 420
           GGGNSGVEAAIDLAGIV HVTLIEF AEL+ADAVL RKL SL NVT++TSAQTTEITGDG
Sbjct: 358 GGGNSGVEAAIDLAGIVGHVTLIEFGAELRADAVLQRKLNSLANVTVITSAQTTEITGDG 417

Query: 421 QRVNGISYKERDTGEIKHVALEGVFVQIGLVPNTEWLKGTLALSKHGEIEIDAKGQTSIP 480
           +RVNG+ YK+R T EIK V LEGVF+QIGLVPNTEWLKGT+ALS+HGEIE+D+ G+TSIP
Sbjct: 418 KRVNGLVYKDRKTEEIKSVELEGVFIQIGLVPNTEWLKGTVALSRHGEIEVDSHGRTSIP 477

Query: 481 GVFAAGDVTTVPYKQIVIAVGAGATAALSAFDHLIRSS-ADDVAPAATKEAVAA 533
           GVFAAGDVTTVPYKQIVIAVG GA A+LSAFD+LIRSS  D+V   AT EAV A
Sbjct: 478 GVFAAGDVTTVPYKQIVIAVGEGAKASLSAFDYLIRSSDTDEVEAPATSEAVTA 531


>gi|152980722|ref|YP_001352843.1| thioredoxin reductase (NADPH)
           [Janthinobacterium sp. Marseille]
          Length = 317

 Score =  162 bits (410), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/322 (34%), Positives = 174/322 (54%), Gaps = 25/322 (7%)

Query: 209 LSAQAPYDVLIVGGGPAGAAAAIYAARKGIR----TGVVAERFGGQVLDTLAIENF---- 260
           +S+     VLI+G GPAG +AA+YAAR  ++    TGV     GGQ++ T  +EN+    
Sbjct: 1   MSSAKHAHVLILGSGPAGYSAAVYAARANLKPVLITGV---EQGGQLMTTTDVENWPGDP 57

Query: 261 VSVQETEGPQFATALEQHVRAYDVDIMNVQRAEALVPGDKLIEVKLANGGVLKGKTVILS 320
           + VQ   GP+    L QH   ++ +I+           +K I + + + G     ++I++
Sbjct: 58  LGVQ---GPELMQRLLQHAERFNTEII-FDHIHTTKLDEKPIRL-IGDAGEYTCDSLIIA 112

Query: 321 TGARWRNVNVPGEQEYKNKGVAYCPHCDGPLFKGKRVSVIGGGNSGVEAAIDLAGIVAHV 380
           TGA  + + +P EQ +  KGV+ C  CDG  ++ + V+VIGGGN+ VE A+ L+ I   V
Sbjct: 113 TGASAQYLGLPSEQAFMGKGVSACATCDGFFYRNQEVAVIGGGNTAVEEALYLSNIANKV 172

Query: 381 TLIEFAAELKADAVLVRKLKSL---PNVTIVTSAQTTEITGDGQRVNGISYKERDTGEIK 437
           T++    + +A+A+L+ +L +      + +  ++   E+TGD   V G++ K    G I 
Sbjct: 173 TVVHRRDKFRAEAILIDRLMAKVAEGKIEVKWNSTLEEVTGDDSGVTGMTIKSTADGSIT 232

Query: 438 HVALEGVFVQIGLVPNTEWLKGTLALSKHGEIEIDA-----KGQTSIPGVFAAGDVTTVP 492
            + L GVFV IG  PNT   +G L ++ +G I+           TS+PGVFAAGDV    
Sbjct: 233 PIKLHGVFVAIGHKPNTSIFEGQLEMN-NGYIKTKTGLEGMATSTSVPGVFAAGDVQDHV 291

Query: 493 YKQIVIAVGAGATAALSAFDHL 514
           Y+Q + + G G  AAL A  +L
Sbjct: 292 YRQAITSAGTGCMAALDAQRYL 313


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,125,104
Number of extensions: 45764
Number of successful extensions: 199
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 2
Length of query: 533
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 445
Effective length of database: 895,685
Effective search space: 398579825
Effective search space used: 398579825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)