BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4163.p
         (384 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981033|ref|YP_001354938.1| D-alanyl-D-alanine carboxypepti...   535   e-153
gi|152981425|ref|YP_001352421.1| D-alanyl-D-alanine-endopeptidas...    57   2e-09

>gi|152981033|ref|YP_001354938.1| D-alanyl-D-alanine
           carboxypeptidase [Janthinobacterium sp. Marseille]
          Length = 382

 Score =  535 bits (1379), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 265/382 (69%), Positives = 319/382 (83%), Gaps = 4/382 (1%)

Query: 1   MKKLLAALAATVLSFSALTASAQTLPPPTVAAKSWLLLDASANQVIASSEPDMRVEPASL 60
           MKKLLAA+AATVLS S  +A AQ++P PT+ AKSWLLLDA++NQV+AS+EPDMR+EPASL
Sbjct: 1   MKKLLAAIAATVLSLS--SAFAQSVPSPTINAKSWLLLDATSNQVLASNEPDMRIEPASL 58

Query: 61  TKLMTAYLAFAALRDKRLSLEQEVNVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISV 120
           TKLMTAY+AF A++DK+L L Q + +S NAWKVDPSSSKMFIEP  PV +++LLYGLI  
Sbjct: 59  TKLMTAYVAFTAIQDKKLDLNQMITISTNAWKVDPSSSKMFIEPRVPVKVNDLLYGLIVQ 118

Query: 121 SGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSPDTYTTARDLSILC 180
           SGNDAAVA+AEAV+GTEDAFV LMNREA+R G+ +THF+NPHGLPS   Y+TARDLS+L 
Sbjct: 119 SGNDAAVAIAEAVAGTEDAFVALMNREAERMGMKSTHFANPHGLPSASNYSTARDLSVLA 178

Query: 181 RNLINDFPEYYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSAH 240
            +LIND PE+YK  YS K++TYNNI QPNRNRLLWLDPTVDGMKTG+T  AGY LI++A 
Sbjct: 179 SHLINDHPEFYK-IYSTKEYTYNNIKQPNRNRLLWLDPTVDGMKTGYTQGAGYCLISTAK 237

Query: 241 RPVPNGERRLISVVIGTVSDAVRTQESQKLLNWGFQNFDAVKLYAKGQPVDTPDVWKGSQ 300
           RP   GERRLISVV+GT+SD  R QESQKLLNWGF NFD VKLYAK +P+ TP+VWKG+Q
Sbjct: 238 RPNGTGERRLISVVLGTISDQARAQESQKLLNWGFLNFDTVKLYAKNEPIATPNVWKGTQ 297

Query: 301 SKIKVGFKNDVYITIPKGTADKVKTKLDRNDPLIAPISENAKVGTLKV-TIDDKTVAELP 359
           + IK+GF  DVYIT+PKG A+ +K  L R DPL+API +N++VGT+KV + D K V+ELP
Sbjct: 298 NSIKIGFTRDVYITVPKGVANTMKPVLARKDPLVAPIDKNSQVGTIKVMSADGKVVSELP 357

Query: 360 VVALESVGPAGFLGRAWDSLRL 381
           V+ALE VG AG  GRA DS+RL
Sbjct: 358 VLALEQVGQAGLFGRALDSIRL 379


>gi|152981425|ref|YP_001352421.1| D-alanyl-D-alanine-endopeptidase
           [Janthinobacterium sp. Marseille]
          Length = 436

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 28/228 (12%)

Query: 30  VAAKSWLLLDASANQVIASSEPDMRVEPASLTKLMTAYLAFAALRDKRLSLE---QEVNV 86
           +A+   L+LD S + V+     ++ +  AS+TKLMT  +   A +D    LE   ++++ 
Sbjct: 182 LASNVALVLDQSTSAVLFEKNANVTLPIASITKLMTGLVVVEAQQDMNEILEVTEEDIDR 241

Query: 87  SVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISVSGNDAAVAVAEAVSGTEDAFVQLMNR 146
             N      SSS++ +     +S  N+L+  +  S N AA A+     G   AFV  MN 
Sbjct: 242 EKN------SSSRLRV--GSQLSRANMLHIALMSSENRAASALGRHYPGGIRAFVAAMNA 293

Query: 147 EAQRQGLTNTHFSNPHGLPSPDTYTTARDLSILCRNLINDFPEYYKRYYSVKKFTYN--- 203
           +A+  G+  TH+ +  GL S +   +A DL+ L     N      ++Y +  K+      
Sbjct: 294 KARSLGMNGTHYVDSTGL-SSNNVASAADLAKLVIAASNH--SILRQYSTDTKYVVEPGG 350

Query: 204 -NITQPNRNRLL----WLDPTVDGMKTGHTSSAGYSLITSAH---RPV 243
             +   N NRL+    W    +   KTG+ S AG  L+  A+   RP+
Sbjct: 351 RALQYANSNRLVNNPDW---EIGIQKTGYISEAGRCLVMQANINGRPI 395


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 839,796
Number of extensions: 33123
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 299
Effective length of database: 906,776
Effective search space: 271126024
Effective search space used: 271126024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)