BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4161.p
         (108 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982584|ref|YP_001354936.1| ferredoxin 2fe-2s protein [Jant...   156   3e-40

>gi|152982584|ref|YP_001354936.1| ferredoxin 2fe-2s protein
           [Janthinobacterium sp. Marseille]
          Length = 106

 Score =  156 bits (394), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 89/105 (84%), Gaps = 1/105 (0%)

Query: 4   QDQPYYEHHVFFCLNQRQPGERTCCADKGAQAAQEHAKKRIKQLGLAAPGKVRINKAGCL 63
           +D+ ++  H+F C+NQR  G R CCA++GA AAQ+H K R+K+LGL+  G+VR+N++GCL
Sbjct: 3   EDKQFFGQHLFICMNQRDDG-RECCAERGAHAAQKHLKARVKELGLSRSGEVRVNQSGCL 61

Query: 64  ERCEEGPVVVIYPQGTWYTYVDQEDIDEIIDSHIVGGKVVDRLKI 108
            RCEEGPV+VIYPQGTWYTYVD ED+DEIID H+VGGKVV+RLKI
Sbjct: 62  GRCEEGPVIVIYPQGTWYTYVDNEDLDEIIDVHLVGGKVVERLKI 106


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 255,919
Number of extensions: 8824
Number of successful extensions: 20
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 38
Effective length of database: 962,231
Effective search space: 36564778
Effective search space used: 36564778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)