BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4160.p
         (383 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980887|ref|YP_001354935.1| hypothetical protein mma_3245 [...   352   3e-98

>gi|152980887|ref|YP_001354935.1| hypothetical protein mma_3245
           [Janthinobacterium sp. Marseille]
          Length = 385

 Score =  352 bits (902), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/377 (52%), Positives = 260/377 (68%), Gaps = 2/377 (0%)

Query: 5   PDHASVLPATPASAPVASSFARVSLLVYTLLIVYASWYPFSGWRDIGIKPFDYLGARLP- 63
           PD   ++PA       AS+F+R +LL Y  LIVYAS YPF+GW+D+G+    YL A +P 
Sbjct: 6   PDE-KIIPAQQPPPLQASTFSRGALLAYLFLIVYASLYPFTGWQDVGLPLQTYLLATMPP 64

Query: 64  YYWTGFDVWTNVAGYAPLGLLLVLSLYPLLRPWWAVWPAALAGVLLSACMEAVQTYLPTR 123
            YWTGFD+ TN+ GY PLG+L V +LYP +R + A+  A   G++LS  MEA Q YLP+R
Sbjct: 65  RYWTGFDLLTNILGYIPLGMLAVYALYPQVRRFGALLLAFALGIILSGTMEATQAYLPSR 124

Query: 124 VPSNLDLLTNSIGVTLGALLGAACSRYFLQESRFLLLRRRWFSSQASRGLVVAGLWPLAL 183
           V SN+DLLTNS+G  +GAL+G A S   L+ SR   LR+RWF+++ASRGL +  LWPLA 
Sbjct: 125 VASNMDLLTNSLGALIGALIGIASSHLVLERSRLRHLRQRWFTAEASRGLTIFALWPLAQ 184

Query: 184 IYPQNHLFGLGHLVPPVSAFFSDLLDTPIDLATTWLNSAQLSAEQYWLADVIVTACGLTG 243
           IYPQ++LFG G L+P  S + S+ L TP+DL +      QL+ EQYWL + I+TACG+ G
Sbjct: 185 IYPQSYLFGQGQLLPVFSDWLSEWLATPVDLGSFLRQGIQLTVEQYWLTEAIITACGVGG 244

Query: 244 AALLMLLLLGRQAPRRRLVTLYLLGCIAAKSLACALFFAPQNAFVWISPSAVGGIMLGTM 303
           A L +  +L  +APR  L+ L LL  +A K LA A+FF+P  AF W++P A GG++LG  
Sbjct: 245 ALLALACMLRDKAPRLVLLLLLLLAALAVKGLATAIFFSPDAAFAWLTPGAQGGLLLGLA 304

Query: 304 MIAGLTWAPPAAQRRVAALALILALVVTNAVPANPYYLSTLETWVQGKFLNFDGAAQFLS 363
           ++ GL +     QRR AA  LI  L+V N  P NPY+++TLETWVQGKFLNF+GAAQFLS
Sbjct: 305 LLTGLIFLSRTNQRRAAAGLLIAGLIVVNIAPTNPYFIATLETWVQGKFLNFNGAAQFLS 364

Query: 364 VLWPFLAIWFLLHPVHR 380
           + WPF A+WFLLH  HR
Sbjct: 365 LFWPFAALWFLLHSSHR 381


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.327    0.140    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 737,258
Number of extensions: 23972
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 298
Effective length of database: 906,776
Effective search space: 270219248
Effective search space used: 270219248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)