BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4159.p
         (257 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981415|ref|YP_001354930.1| bifunctional biotin operon repr...   234   4e-63

>gi|152981415|ref|YP_001354930.1| bifunctional biotin operon
           repressor /biotin--[acetyl-CoA-carboxylase] synthetase
           [Janthinobacterium sp. Marseille]
          Length = 307

 Score =  234 bits (597), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 134/255 (52%), Positives = 167/255 (65%), Gaps = 1/255 (0%)

Query: 3   LAGSDPQGQQRIDVEAVAQTGSTNIDLMQRLSSLQRPLLLVADRQTAGRGRAGRPWRAQP 62
           LAG      Q I +E VA+TGSTN DL+ R   LQ+P LL A  QTAG+GRAGR W    
Sbjct: 54  LAGLCTNAAQAIALEIVAETGSTNADLLARAPHLQQPTLLWAQVQTAGKGRAGRAWHTPA 113

Query: 63  QDSLTFSLAWRLQRPTHALLGLPLAVGVALAEALEVFGIRPQLKWPNDVLRDGAKLAGIL 122
             +LTFSLAW+   P   LLGLPLAVGV +AEAL  FG+  +LKWPNDVL+D  KLAGIL
Sbjct: 114 GAALTFSLAWKFNLPLQGLLGLPLAVGVVIAEALRTFGVDARLKWPNDVLKDDGKLAGIL 173

Query: 123 IETAAEGGRADATWAVIGIGLNLGVPSGLEDELQRAVGSAPELQKPPRETVLAIIVSALS 182
           IET A+     A+W VIG+G+N+   S L  +  RAV +A EL   P E  +A ++   +
Sbjct: 174 IETVADKSGQPASWVVIGVGINIARASDLSAQTGRAVVAATELAAEP-ERAMAALLDGFA 232

Query: 183 EVLTEFEQRGFGAFVKRWETFHAYAGQSVKIVDNGRVVHEGIALGVDMMGRFLIDTEAGQ 242
           + L  FEQ GF  FV  W    AYAGQ+V I+D G+V+H G A GVD  GR L+DT  G+
Sbjct: 233 QALPRFEQEGFAGFVDAWNALDAYAGQAVNILDQGQVLHSGHAAGVDAGGRLLLDTAQGR 292

Query: 243 IEVLAGDVSLRLQDG 257
           I V+AGDVSLR+++G
Sbjct: 293 ITVVAGDVSLRIREG 307


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 519,514
Number of extensions: 20147
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 176
Effective length of database: 921,564
Effective search space: 162195264
Effective search space used: 162195264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)