BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4157.p
         (267 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982416|ref|YP_001354928.1| hypothetical protein mma_3238 [...   147   7e-37

>gi|152982416|ref|YP_001354928.1| hypothetical protein mma_3238
           [Janthinobacterium sp. Marseille]
          Length = 237

 Score =  147 bits (371), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 133/249 (53%), Gaps = 32/249 (12%)

Query: 18  FGLTRGYFGASATERREPQRLAQQLHPELLSVLPANSEKLASQLRAQPSTAQVASADATA 77
           +    GY  A      +P RL QQL+P+ L +LP   E  A++        +VA  +   
Sbjct: 17  YAFQHGYLDALIPPSHDPLRLKQQLNPDQLKLLPLPVENGAAE-----KVEKVAVVEPEK 71

Query: 78  TAPAAAATLTPATSTTSTTATQPAPTAATQTVAVTPSCTEVGNFTAADARRFSEQLASLN 137
                     P T               T+  A   +CTE+GNF AA+A+ F  +LA+L 
Sbjct: 72  I---------PQT---------------TEKAADVLACTEIGNFDAAEAKNFEAKLAALA 107

Query: 138 LGDKVVQKLTQDVTSHMVYIAPEGGREGADRRVAELRRLGIGDFYVIPDSFPNPALRYGV 197
           LG++++++  Q+    +VYI P   +E AD++  EL+RLG+ DF+VI +  P   L++G+
Sbjct: 108 LGERLIRRPVQENARFIVYIPPLANKEAADKKGGELKRLGVDDFFVISEHTP---LQWGI 164

Query: 198 SLGIFRTEEAAKAYVGQLISRGVRSARIIARRSGAGKQVFQLRDLTPEARTALENIKSAF 257
           SLGIF++EEAA+ ++  L  +GVRSAR+        K  +Q+R +    +  L+ I++ F
Sbjct: 165 SLGIFKSEEAARNHLAALNQKGVRSARVGPHNVAPAKFAYQVRRIDAPTKANLDKIRATF 224

Query: 258 PDQEIRACS 266
           P QE RACS
Sbjct: 225 PRQEERACS 233


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 414,586
Number of extensions: 13317
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 185
Effective length of database: 917,867
Effective search space: 169805395
Effective search space used: 169805395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)