BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4155.p
         (306 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981515|ref|YP_001354923.1| hypothetical protein mma_3233 [...   202   3e-53

>gi|152981515|ref|YP_001354923.1| hypothetical protein mma_3233
           [Janthinobacterium sp. Marseille]
          Length = 314

 Score =  202 bits (513), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 115/290 (39%), Positives = 171/290 (58%), Gaps = 2/290 (0%)

Query: 19  APARAATTADTVQP--APPRGALYQVSDGRHTLLLFGTIHVGAPDFYPLEPRLTRALAAA 76
           A A A T+  T Q   AP RG LY+V+   +T  LFGT+HVG   FYPLEP++T+ALAAA
Sbjct: 25  ASALATTSQKTAQKPGAPQRGTLYRVTYRGNTSYLFGTVHVGKTAFYPLEPQVTQALAAA 84

Query: 77  PVLALELDPANTGAMQSAVQRHGLYPAGEHLLDQLDAPLRERTESALQGLGMVPASVQQL 136
             L +E+D  NT AM+ A+ RHGLYP G+ +   L A    +   AL+  G    S+ ++
Sbjct: 85  KKLVIEVDIRNTEAMRQAIMRHGLYPDGQTINQHLSADATAQLRQALRRSGTPFESIARM 144

Query: 137 RPWMLAMVLSVQQYVRHGYRTDLAVDSHLAATVRAHGGKVVELESAERQMAIFSKLGQAQ 196
           +PWM+A +L VQ+  R G+ ++  ++ H  A       KV ELE+A+ Q+++F  +  A+
Sbjct: 145 KPWMVANLLLVQEMARSGFPSEQGIELHFLAIAEQQKKKVQELETADYQLSLFDSMSDAE 204

Query: 197 QIQFLADTLQELDDANLTRKLDFLVDAWRHADSAGFANALKELQEDGSFSSHFTVQALLR 256
           Q ++L + L EL      +K   L++AW+ AD+     AL E+Q+  + S  F    LL 
Sbjct: 205 QEEYLIENLTELASGEAMKKALELINAWQSADAKALDAALLEMQKGENASDRFLQTVLLD 264

Query: 257 ERNPGLAAGIAELLQRQDQAVAAIGILHLVGPDSVPVLLGKRGLQVKQLY 306
           +RNP +A  +  LL+    +  A+G LHL+G   VP LL +RG QV++LY
Sbjct: 265 QRNPNMAKQVEALLKTDKNSFVAVGALHLLGAKGVPSLLQQRGYQVQKLY 314


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 657,549
Number of extensions: 24663
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 223
Effective length of database: 914,170
Effective search space: 203859910
Effective search space used: 203859910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)