BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4154.p
         (255 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982245|ref|YP_001354922.1| hypothetical protein mma_3232 [...   287   4e-79

>gi|152982245|ref|YP_001354922.1| hypothetical protein mma_3232
           [Janthinobacterium sp. Marseille]
          Length = 241

 Score =  287 bits (735), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 148/236 (62%), Positives = 181/236 (76%), Gaps = 10/236 (4%)

Query: 19  WLFDLDNTLHNASHAIFPAINTNMNRIIKRVLDHDGQPSDEAAVNYLRRHYWKLYGATLL 78
           WLFDLDNTLHNASHAIFPAI+ NMN  I +VL  +G  SDEAAVN  R  YW+ YGATLL
Sbjct: 6   WLFDLDNTLHNASHAIFPAIHLNMNVYIAQVLKQNGLASDEAAVNRARVAYWQRYGATLL 65

Query: 79  GLVRHHGLEVDEFLHEAHLFDDLPGMVRAERGIGRWLSQLPGQKILLTNAPRRYSRELVR 138
           G+V HH +  ++FL EAH FDDLP M+RAERG+ R L  LPG+KILLTNAPRRYSR+++R
Sbjct: 66  GMVNHHQVRPEDFLREAHRFDDLPTMIRAERGLARLLRGLPGRKILLTNAPRRYSRDVLR 125

Query: 139 HLGLQRHFSHHISIESMHVHRQLRPKPSRLMLRKLLARHKVAPRRCILVEDTVDNLRSAR 198
           HLGL RHF+ HI IE+M VH +L+PKPS+ MLRKLLAR +++ +RC+LVEDTV +L+ A+
Sbjct: 126 HLGLHRHFAKHIPIEAMRVHGRLKPKPSKQMLRKLLARERISAQRCVLVEDTVSHLKGAK 185

Query: 199 ELGVRTAWVTQYL---RGSQALLG---PIGGQRVLSRLPAYVDVKVRSVRQLPRRL 248
           ELG+ TAWVTQYL      QAL G    +G     ++ P YVDVKV+SV QL R+L
Sbjct: 186 ELGMGTAWVTQYLAADSNKQALTGYHATVG----CTKRPIYVDVKVKSVGQLFRQL 237


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 601,532
Number of extensions: 24807
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 174
Effective length of database: 921,564
Effective search space: 160352136
Effective search space used: 160352136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)