BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4152.p
         (336 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981264|ref|YP_001354893.1| site specific integrase/recombi...   393   e-110
gi|152981084|ref|YP_001352164.1| integrase/recombinase [Janthino...   123   2e-29

>gi|152981264|ref|YP_001354893.1| site specific
           integrase/recombinase protein [Janthinobacterium sp.
           Marseille]
          Length = 319

 Score =  393 bits (1009), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/315 (64%), Positives = 239/315 (75%), Gaps = 11/315 (3%)

Query: 12  YLSFLRSQRKLSPHTLENYGRDLQELRALLAPADDHDGVADSTLPHVSQPQIRKCAARLH 71
           YL  L SQR+L+P T  +Y RDL EL A    +D     + +TL  V+  QIRK AA+LH
Sbjct: 13  YLDNLISQRQLAPLTTVSYRRDLLELLAFATASD-----SKATLTGVTHFQIRKFAAQLH 67

Query: 72  ARGLNARSISRKLSAWRGFFAWLALEEGMALPANPVDGVKPPKKSKPLPKALAADDAIRL 131
           A+GLNARSI+RKLSAWRGFF WL+  E  A+ +NPVDG+K PK+SKPLPKALAADDA+RL
Sbjct: 68  AQGLNARSIARKLSAWRGFFTWLS--EQNAITSNPVDGIKAPKRSKPLPKALAADDAVRL 125

Query: 132 VSHADPARDPASTLAACNRAMFELLYSSGLRVSELVGIDLADVREGRYESAGWIDLAEAE 191
           V+   P +   S +  CN AMFELLYSSGLRVSELVG+D+   +E RY SAGWID    E
Sbjct: 126 VAEHAPGKSADSAMQLCNHAMFELLYSSGLRVSELVGLDVRYAQEARYTSAGWIDFDAHE 185

Query: 192 VTVTGKGGKKRKVPVGKAALQAIQDWLPLRAGLVRADGGPDGHALFLNERGARMSPRVTQ 251
           V VTGKG K R VP+G+AA+ A++ WL +R  LV+     D H LFL+ERG R+S RV Q
Sbjct: 186 VMVTGKGNKMRTVPIGQAAMDALKAWLAVRDTLVKL----DPHPLFLSERGTRVSARVVQ 241

Query: 252 LRLKAHGKGVEMATDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQ 311
           LRLKAHG+ + + TDVHPH+LRHSFASHVLQSSGDLRAVQEMLGHASI ATQ+YT+LDFQ
Sbjct: 242 LRLKAHGQAIGLPTDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYTSLDFQ 301

Query: 312 RLAQVYDQAHPRAHK 326
           RLAQVYD AHPRA K
Sbjct: 302 RLAQVYDAAHPRAKK 316


>gi|152981084|ref|YP_001352164.1| integrase/recombinase
           [Janthinobacterium sp. Marseille]
          Length = 301

 Score =  123 bits (308), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 133/247 (53%), Gaps = 19/247 (7%)

Query: 77  ARSISRKLSAWRGFFAWLALEEGMALPANPVDGVKPPKKSKPLPKALAADDAIRLVSHAD 136
           A S +R+L+  + F+  LAL +   +  +P   ++  K+   +PK L+      L++   
Sbjct: 73  ATSSNRRLAVLKRFYQ-LALRQN-KIKDDPCLRLRSAKQPPRMPKTLSEAQVEALLA--- 127

Query: 137 PARDPASTLAACNRAMFELLYSSGLRVSELVGIDLADVREGRYESAGWIDLAEAEVTVTG 196
            A D  + L   +R M EL+Y+SGLRV+ELV +   +V            + E  + VTG
Sbjct: 128 -APDVNTPLGLRDRTMLELMYASGLRVTELVLLKSVEV-----------GMNEGVLRVTG 175

Query: 197 KGGKKRKVPVGKAALQAIQDWLPLRAGLVRADGGPDGHALFLNERGARMSPRVTQLRLKA 256
           KGGK R +P G+ A   I+ +L    G +  +G  D  ALF+  RG  M+ ++    +K 
Sbjct: 176 KGGKTRLIPFGEEARAWIERYLKEARGAI-LNGQMDD-ALFVTARGGAMTRQMFWTLIKK 233

Query: 257 HGKGVEMATDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQRLAQV 316
           H    ++   + PH LRH+FA+H+L    DLR VQ +LGH+ I+ TQ+YT +  +RL ++
Sbjct: 234 HAAAADINAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKRL 293

Query: 317 YDQAHPR 323
           +   HPR
Sbjct: 294 HQMHHPR 300


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 698,011
Number of extensions: 25135
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 252
Effective length of database: 910,473
Effective search space: 229439196
Effective search space used: 229439196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)