BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4150.p (422 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinob... 142 6e-35 gi|152981829|ref|YP_001355256.1| porin [Janthinobacterium sp. Ma... 130 2e-31 gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Ma... 127 1e-30 gi|152981718|ref|YP_001352190.1| porin [Janthinobacterium sp. Ma... 114 1e-26 gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Ma... 108 5e-25 >gi|152981617|ref|YP_001351980.1| outer membrane porin [Janthinobacterium sp. Marseille] Length = 364 Score = 142 bits (357), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 147/453 (32%), Positives = 188/453 (41%), Gaps = 120/453 (26%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGITYTSKAATGTGTNTGSKFAVNSGNIQ 60 MKKSLLALAVLGAFAGAA AQSSVT+YGIVD G + G GSK ++SG Sbjct: 1 MKKSLLALAVLGAFAGAASAQSSVTVYGIVDLGFAHVDD-----GNPAGSKNGIDSGGQS 55 Query: 61 GSRIGFKGVEDLGGGLSAVFNLE----------------------TGFTNDNGGLQGSDA 98 SRIGFKG EDLG GL A+F LE G N+ GG Sbjct: 56 ASRIGFKGTEDLGNGLKALFQLEATLQADTGAGFGAAAAPATGFNAGVANNAGG------ 109 Query: 99 VTGSNLFRRKSVVGL-SGGFGTVLLGRQTDFADTISAYTSVNDFG-----GLTGNVGHNL 152 F R + VGL S FGTVLLGRQT AY ++ FG G V N Sbjct: 110 ------FNRFATVGLQSAAFGTVLLGRQTSVIK--DAYDQIDPFGDGGTVGAISTVFFN- 160 Query: 153 NRLEGT--RTNNSISYTTANLNGFTGNLIYGFGETAGKTSAGQSFGLGAKYDNGPLGLGA 210 L G R +NS Y + + GF YGFGET G T A ++GLG Y NGPL + Sbjct: 161 GVLAGDYGRISNSAKYQSNSFGGFKFGAAYGFGETPGDTGANSNYGLGLGYANGPLNVQF 220 Query: 211 NYYQSKQGTTPSDTALIQGVAPAASASATALADYTIATGQNSANAGNTALKVFNLVASYQ 270 Y+ + T +A+ ++ + K+ L A+Y Sbjct: 221 AYHNQDRST---------------------VANPSVQQAEG---------KLMLLGATYD 250 Query: 271 FGPARVYGNWSRVKQDLNTAANVAALRSTVATGSTIAVASPLTAANRAAAATLGLATKAD 330 FG +++G + K + N+ AN K Sbjct: 251 FGVVKLHGAYGDTKLE-NSVANT--------------------------------EVKYR 277 Query: 331 IYELGTAYSLSPSLKLLAAVEYTTASFDGLNGKGKLTQYNLGADYWLSKRTDLYAFVNNL 390 Y LG + + P + S D + K ++ + Y LSKRT+LY + Sbjct: 278 NYMLGVSAPVGPGTIFASYTANDNRSVDNADAK----KFAISYSYDLSKRTNLYTGYSKT 333 Query: 391 RAKDMKNPGV-FGDSTGSDASQTAVTVGVRHKF 422 D G+ G G AS VG+RHKF Sbjct: 334 SNDDGSRIGLNAGAPVGESAS--IFNVGIRHKF 364 >gi|152981829|ref|YP_001355256.1| porin [Janthinobacterium sp. Marseille] Length = 363 Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 139/435 (31%), Positives = 185/435 (42%), Gaps = 95/435 (21%) Query: 4 SLLALAVLGAFAGAAQAQSSVTIYGIVDTGITYTSKAATGTGTNTG-----SKFAVNSGN 58 S+L A + +++ ++AQSSVT+ GI D G+ N+G SK V+SG Sbjct: 8 SVLLTASILSYSSLSRAQSSVTMEGIAD--------GFMGSMRNSGDAARTSK--VDSGG 57 Query: 59 IQGSRIGFKGVEDLGGGLSAVFNLETGFTNDNGGLQGSDAVTGSNLFRRKSVVGLSGGFG 118 + S IGFKG EDLGGGL A F L + D+G G F R + V LSG FG Sbjct: 58 LSTSYIGFKGFEDLGGGLKASFTLGAFYRIDDGAYG---RFGGDTFFARDANVALSGSFG 114 Query: 119 TVLLGRQTDFADTISAYT--SVNDFGGLTGNVGHNL---NRLEGT--RTN----NSISYT 167 ++LGR T T+ Y V D L+ V H + N GT RT+ NSI+YT Sbjct: 115 KLMLGRMTP-PTTLPLYMFNPVEDSFSLSPLVLHTIVGTNVFPGTFGRTDSAWSNSIAYT 173 Query: 168 TANLNGFTGNLIYGFGETAGKTSAGQSFGLGAKYDNGPLGLGANYYQSKQGTTPSDTALI 227 + G T NL Y FGE AG +S G A Y NGPL LG Y+ + G P D ++ Sbjct: 174 SPTFAGLTFNLHYQFGEAAGNSSKNNK-GANALYQNGPLALGLAYHDVQVG-NPVDNPIV 231 Query: 228 QGVAPAASASATALADYTIATGQNSANAGNTALKVFNLVASYQFGPARVYGNWSRVKQDL 287 + +AT Q A G SY F + + + R D+ Sbjct: 232 PNGPSVMLSVPVPGGPNLVATRQKLAFVG----------GSYDFSYLKFFATYDRATHDV 281 Query: 288 NTAANVAALRSTVATGSTIAVASPLTAANRAAAATLGLATKADIYELGTAYSLSPSLKLL 347 + + TLGL+ LG KLL Sbjct: 282 DL---------------------------KDQTGTLGLSV-----PLGNG-------KLL 302 Query: 348 AAVEYTTASFDGLNGKGKLTQYNLGADYWLSKRTDLYAFVNNLRAKDMKNPGVFGDSTGS 407 AV T L K T ++G DY+LSKRTDLY+F+ N D T Sbjct: 303 GAVAQTKRE-SALFSDVKRTTVSVGYDYFLSKRTDLYSFLMN-------------DKTTD 348 Query: 408 DASQTAVTVGVRHKF 422 A+ +V VG+RH+F Sbjct: 349 YANAVSVAVGMRHRF 363 >gi|152981715|ref|YP_001353752.1| porin [Janthinobacterium sp. Marseille] Length = 327 Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 102/242 (42%), Positives = 129/242 (53%), Gaps = 38/242 (15%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGITYTSKAATGTGTNTGSKFAVNSGNIQ 60 MKK+L A ++L + AGA QSSVT+YG+VD G+ + G GT TG ++SGN Sbjct: 1 MKKTLFAFSMLASMAGATYGQSSVTVYGVVDLGLKIEN---AGNGTVTG----IDSGNQS 53 Query: 61 GSRIGFKGVEDLGGGLSAVFNLETGFTNDNGGLQGSDAVTGSNLFRRKSVVGLSGGFGTV 120 SR+GFKG EDLG GL A F LE GF D+G SDA + F R+S V L+GGFG V Sbjct: 54 VSRVGFKGTEDLGNGLKANFVLEAGFNADSG--SQSDA---TRFFNRQSYVSLAGGFGEV 108 Query: 121 LLGR-QT----------DFADTISAYTSVNDFGGLTGNVGHNLNRLEGTRTNNSISYTTA 169 LGR QT FADT++ SV F N G G R +N+++Y+ A Sbjct: 109 KLGRVQTMVFTNSAVFDPFADTLAG-DSVRIF-----NYG-------GNRIDNTVNYSFA 155 Query: 170 NLNGFTGNLIYGFGETAGKTSAGQSFGLGAKYDNGPLGLGANYYQSKQ--GTTPSDTALI 227 NG G Y FGE AG TSA ++ Y +GPL Y +K G + T LI Sbjct: 156 AKNGINGQAAYSFGEVAGNTSASRTVAGAIGYASGPLATVLTYQDTKDVTGNDSAKTTLI 215 Query: 228 QG 229 G Sbjct: 216 GG 217 >gi|152981718|ref|YP_001352190.1| porin [Janthinobacterium sp. Marseille] Length = 364 Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 135/435 (31%), Positives = 181/435 (41%), Gaps = 94/435 (21%) Query: 3 KSLLALAVLGA-FAGAAQAQSSVTIYGIVDTGITYTSKAATGTGTNTGSKFAVNSGNIQG 61 + L +A LGA A A AQ+SV + G+VD I + + G VNSG + Sbjct: 9 RKLQCVAALGAACALPAMAQTSVQVTGLVDNFIGSVKYSG-----DAGRSSVVNSGGMTT 63 Query: 62 SRIGFKGVEDLGGGLSAVFNLETGFTNDNGGLQGSDAVTGSNLFRRKSVVGLSGGFGTVL 121 S GFKG EDLGGGL A FNL + F D GG D F R + VGL G FG + Sbjct: 64 SWFGFKGTEDLGGGLKAKFNLTSFFRADTGGAGRFDG--NETFFSRDANVGLIGKFGEIS 121 Query: 122 LGRQTDFADTISAYTSVNDFGG---LTGNVGH-NLNRLEGTRTNNSIS----------YT 167 LGR D A N FG L+ + H ++ G+R +NS++ YT Sbjct: 122 LGR--DLAPHFLPSILFNPFGDSFQLSPLMLHADVPLFNGSRWSNSVAADTGWSNEIIYT 179 Query: 168 TANLNGFTGNLIYGFGETAGKTSAGQSFGLGAKYDNGPLGLGANYYQSKQGTTPSDTALI 227 T N+ G N+ Y FGE AG+ S + G+ Y NGPLGL A YYQ + P + Sbjct: 180 TPNMAGLKANIHYQFGEVAGQ-SGKNNVGMNLLYSNGPLGLAA-YYQKIRVNNPLEQT-P 236 Query: 228 QGVAPAASASATALADYTIATGQNSANAGNTALKVFNLVASYQFGPARVYGNWSRVKQDL 287 V PA AT L T A Q G SY F A+++ +++ D+ Sbjct: 237 GNVLPA----ATLLGGLTPAR-QTGWFVG----------GSYDFAVAKLFATYNQTSHDV 281 Query: 288 NTAANVAALRSTVATGSTIAVASPLTAANRAAAATLGLATKADIYELGTAYSLSPSLKLL 347 + L +++ G +AS AN TK D +G Sbjct: 282 DLQDRTVQLGTSIPLGQGAILAS---WAN----------TKRDGAAIGQ----------- 317 Query: 348 AAVEYTTASFDGLNGKGKLTQYNLGADYWLSKRTDLYAFVNNLRAKDMKNPGVFGDSTGS 407 ++ TASF G DY +SKRTDLYA D Sbjct: 318 -DLKRNTASF--------------GYDYNISKRTDLYAV-------------YMYDKITQ 349 Query: 408 DASQTAVTVGVRHKF 422 + V +G+RH+F Sbjct: 350 QNTGNTVALGIRHRF 364 >gi|152981716|ref|YP_001354197.1| porin [Janthinobacterium sp. Marseille] Length = 326 Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 121/431 (28%), Positives = 173/431 (40%), Gaps = 127/431 (29%) Query: 6 LALAVLGAFAGAAQAQSSVTIYGIVDTGITYTSKAATGTGTNTGSKFAVNSGNIQGSRIG 65 LALA + A A+QAQSSV +YG++D + Y + G TG V +G + S +G Sbjct: 9 LALAAMLACGTASQAQSSVQVYGLIDVALAYDKQP--GKAGVTG----VENGKMTTSYLG 62 Query: 66 FKGVEDLGGGLSAVFNLETGFTNDNGGLQGSDAVTGSNLFRRKSVVGLSGGFGTVLLGRQ 125 KG EDLGGGLS +F LE+ F D G + G + R S VGL G FG+V LGR Sbjct: 63 LKGSEDLGGGLSTIFALESYFRADTG---SNGRFDGDGFWTRSSYVGLQGRFGSVRLGRN 119 Query: 126 T-----------DFADTISAYTSVNDF---GGLTGNVGHNLNRLEGTRTNNSISYTTANL 171 + F D+ S+ + G +TG+ G ++SI+Y + N Sbjct: 120 SVPLFISTLLFNPFGDSFGYSPSIRHYFASGTVTGDSGW----------SDSIAYVSPNF 169 Query: 172 NGFTGNLIYGFGETAGKTSAGQSFGLGAKYDNGPLGLGANYYQSKQGTTPSDTALIQGVA 231 +G T NLI AG+ + G + G Y GPLGL A Y + ++G +DT Q Sbjct: 170 SGLTVNLI----AAAGEGNGGPNVGGSVLYTKGPLGLTAVYQRVRKGAAIADTTTWQ--- 222 Query: 232 PAASASATALADYTIATGQNSANAGNTALKVFNLVASYQFGPARVYGNWSRVKQDLNTAA 291 L +SY F +V+ + +VK Sbjct: 223 ---------------------------------LGSSYDFDVVKVFAQYGQVK------- 242 Query: 292 NVAALRSTVATGSTIAVASPLTAANRAAAATLGLATKADIYELGTAYSLSPSLKLLAAVE 351 NV+A + + VA PL AA L L P + Sbjct: 243 NVSAQPDIEYKLTDLGVAIPLGGGKVLAAYGL----------------LDPVV------- 279 Query: 352 YTTASFDGLNGKGKLTQYNLGADYWLSKRTDLYAFVNNLRAKDMKNPGVFGDSTGSDASQ 411 K +LG DY LSKRTD+Y + D + ++ Sbjct: 280 -----------GAKRETLSLGYDYNLSKRTDVYLVLMR-------------DELDALSAG 315 Query: 412 TAVTVGVRHKF 422 ++ VG+RH+F Sbjct: 316 KSLAVGIRHRF 326 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.129 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 917,226 Number of extensions: 40524 Number of successful extensions: 179 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 9 Length of query: 422 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 336 Effective length of database: 903,079 Effective search space: 303434544 Effective search space used: 303434544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)