BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4148.p
         (287 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980602|ref|YP_001354891.1| diaminopimelate epimerase [Jant...   465   e-132

>gi|152980602|ref|YP_001354891.1| diaminopimelate epimerase
           [Janthinobacterium sp. Marseille]
          Length = 276

 Score =  465 bits (1196), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 222/276 (80%), Positives = 248/276 (89%)

Query: 8   MHGAGNDFVVLDAVNQAISLTPAQWQFIADRRFGIGADQMLVVEKAQGAGVDFRYRIYNA 67
           MHGAGNDFVV+DA+NQAI+ TPAQWQ++ADRRFG+GADQMLVVEK Q AGVDFRYRIYNA
Sbjct: 1   MHGAGNDFVVIDAINQAINFTPAQWQYLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNA 60

Query: 68  DGGEVEQCGNGARAFVRFVTEKGLTDKRAIRVETMSGVIEPRLEEDGQITVDMGAPILTP 127
           DGGEVEQCGNGARAFVRFVT+K LTDKRAI+VETMSG+IEPRLE +GQITVDMGAPIL P
Sbjct: 61  DGGEVEQCGNGARAFVRFVTDKKLTDKRAIKVETMSGIIEPRLEANGQITVDMGAPILNP 120

Query: 128 AEVPFDSRNLQHRQQADDTLWPLEVAGKTTWISVVSMGNPHAVQVVEDSEAAPVLVEGPL 187
            +VPFD+R+L  + + +DTLWPL++ G+T WISVVSMGNPHAVQVV D E APV  +G L
Sbjct: 121 EDVPFDTRDLLCKAEGEDTLWPLDIKGETNWISVVSMGNPHAVQVVADVEEAPVREDGVL 180

Query: 188 IEHHARFPKRVNAGFMQVLDRHHIRLRVYERGAGETLACGTGACAAVVAGIRRGLLDSPV 247
           IEHH RFPKRVNAGFMQ+LD+HHI+LRV+ERGAGETLACGTGACAAVVAGIRRGLL SPV
Sbjct: 181 IEHHPRFPKRVNAGFMQILDQHHIKLRVFERGAGETLACGTGACAAVVAGIRRGLLVSPV 240

Query: 248 AVQTHGGLLNIAWAGPGAPVMMTGPAVTVFEGEIEL 283
            VQT GG L IAW G  +PVMMTGPAVTVFEGEIE+
Sbjct: 241 KVQTRGGELVIAWGGRDSPVMMTGPAVTVFEGEIEI 276


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 693,662
Number of extensions: 29043
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 205
Effective length of database: 917,867
Effective search space: 188162735
Effective search space used: 188162735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)