BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4144.p
         (475 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980530|ref|YP_001354886.1| S-adenosyl-L-homocysteine hydro...   857   0.0  

>gi|152980530|ref|YP_001354886.1| S-adenosyl-L-homocysteine
           hydrolase [Janthinobacterium sp. Marseille]
          Length = 479

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/478 (86%), Positives = 443/478 (92%), Gaps = 5/478 (1%)

Query: 3   SAIAMTTQTNQQDYIVADIKLADWGHKEIKIAETEMPGLMAIREEFAASQPLKGARITGS 62
           +A  MT+ TN  DY++AD+ L+ WG KEI+IAETEMPGLMAIREEFAA+QPLKGARITGS
Sbjct: 2   NAAVMTSPTNFSDYVIADLSLSAWGDKEIRIAETEMPGLMAIREEFAAAQPLKGARITGS 61

Query: 63  LHMTIQTAVLIQTLEALGAQVRWASCNIYSTQDHAAAAIAANGTPVFAIKGETLDEYWEY 122
           +HMTIQTAVLIQTLEALGA+VRWASCNIYSTQDHAAAAIAA GTPVFA+KGETLD+YWEY
Sbjct: 62  IHMTIQTAVLIQTLEALGAKVRWASCNIYSTQDHAAAAIAAAGTPVFAVKGETLDDYWEY 121

Query: 123 THRIFEWT--DGG---YSNMILDDGGDATLLLHLGARAETDISVLAKPDSDEAVCLFNAI 177
           THRIFEW   D G   YSNMILDDGGDATLLLHLG RAE D SVL  P S+E +CLFN+I
Sbjct: 122 THRIFEWPNDDKGAPVYSNMILDDGGDATLLLHLGTRAEKDASVLNNPGSEEEICLFNSI 181

Query: 178 KRYLAKDANWYSKRLKEIKGVTEETTTGVHRLYQMHKEGKLAFPAINVNDSVTKSKFDNL 237
           K++LA DA WYSKRL +I GVTEETTTGVHRLYQMHKEGKLAFPAINVNDSVTKSKFDNL
Sbjct: 182 KKHLAVDATWYSKRLPQILGVTEETTTGVHRLYQMHKEGKLAFPAINVNDSVTKSKFDNL 241

Query: 238 YGCRESLVDGIKRATDVMIAGKVAIVAGYGDVGKGSAQALRALSAQVWVTEIDPICALQA 297
           YGCRESLVDGIKRATDVMIAGKVA++AGYGDVGKGSAQA+RALSAQVWVTEIDPICALQA
Sbjct: 242 YGCRESLVDGIKRATDVMIAGKVAVIAGYGDVGKGSAQAMRALSAQVWVTEIDPICALQA 301

Query: 298 AMEGYRVVTMDYAAEHGDIFVTCTGNYHVITHEHMKKMKDQAIVCNIGHFDNEIEVAALK 357
           AMEGYRVVTM+YAAEHGDIFVTCTGNYHVITHEHMKKMKDQAIVCNIGHFDNEIEVAALK
Sbjct: 302 AMEGYRVVTMEYAAEHGDIFVTCTGNYHVITHEHMKKMKDQAIVCNIGHFDNEIEVAALK 361

Query: 358 QYTWENIKPQVDHVIFPDGKRIILLAEGRLVNLGCATGHPSYVMSSSFANQTIAQIELFV 417
           QYTWENIKPQVDH+IFPDGKRIILLAEGRLVNLGC TGHPSYVMSSSFANQTIAQIEL+ 
Sbjct: 362 QYTWENIKPQVDHIIFPDGKRIILLAEGRLVNLGCGTGHPSYVMSSSFANQTIAQIELYA 421

Query: 418 NTKDYPVGVYTLPKHLDEKVARLQLKKLNAQLSELTPEQAAYIGVKIEGPYKADHYRY 475
           NTK+YPVGVYTLPKHLDEKVARLQLKKLNAQL+ LT EQA YIGV+  GPYK +HYRY
Sbjct: 422 NTKNYPVGVYTLPKHLDEKVARLQLKKLNAQLTTLTTEQANYIGVQQTGPYKPEHYRY 479


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,086,464
Number of extensions: 43721
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 388
Effective length of database: 899,382
Effective search space: 348960216
Effective search space used: 348960216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)