BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4140.p
         (665 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980531|ref|YP_001354882.1| lytic murein transglycosylase [...   809   0.0  

>gi|152980531|ref|YP_001354882.1| lytic murein transglycosylase
           [Janthinobacterium sp. Marseille]
          Length = 649

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/646 (62%), Positives = 489/646 (75%), Gaps = 4/646 (0%)

Query: 21  LALPLALAGAAMLTMAPAAHAQKRLAPDAAPDDIFLALRQAAASDNAALAQDLASRLSGY 80
           LA  + LA +A+  + PAAHAQKR A  A+ DD FLALR A+   +AA A D+ASRL  Y
Sbjct: 7   LARVMLLAASAVFLL-PAAHAQKRAAGFASDDDAFLALRDASRRGDAARAADIASRLGNY 65

Query: 81  ELASYVDYYRLKPRVRDYSASEQEIRDFLARWEGQAIADRLRNDWLLALGKTGNWTVFDE 140
            + SYVDYY+LKPR++D  AS  EI  +L ++ G AIADRLRNDWLL LGK  +W  FDE
Sbjct: 66  AIPSYVDYYQLKPRIKD--ASPIEILAYLNKYNGSAIADRLRNDWLLELGKRRDWVTFDE 123

Query: 141 QYPKFVLNDDTQVKCFALNSRALKGANVAEEARALLTNPKDYGQGCSDLIATLAQNGQFS 200
           QYP+F L+DDTQ+KC+AL S+A KG NVA +ARALLT PK+YG+GC  LI  L +N QF+
Sbjct: 124 QYPQFQLDDDTQLKCYALMSKAQKGMNVAVDARALLTVPKNYGEGCVALIGMLMENSQFN 183

Query: 201 DADVWFQIRQAAENGNATVARRAAVLVDSGDVSVTQVMERPALMLAKGPGRGAANHQLYI 260
           + D+W QIR AAE G+    RR        D S+   ME+PAL+ +KG G     H+++I
Sbjct: 184 EDDLWAQIRLAAETGSTDFVRRLVPFTGIDDGSLITAMEKPALITSKGVGFRRVKHEVFI 243

Query: 261 IALGRIAKSNPTQAATYLS-EARTLTAQEAALGWAQIALAASYKLAPEASDYWRRAKEAP 319
           +ALGRIAK+NP QAA  LS     L  ++ A GWAQIAL AS KLAPEA+DYWR+A  AP
Sbjct: 244 VALGRIAKNNPAQAAEILSGNTLLLNKKQEAQGWAQIALQASMKLAPEAADYWRKAGNAP 303

Query: 320 LSQDAMQWKVRMALRDGDWKTVRKTIEAMPAPLRSDTTWVYWLGRALKEDGQTEAARRLF 379
           LS +  QWK+R ALR GDWK VR+ +EAMP  LR D TW YWL RAL+E+G+ + A  L 
Sbjct: 304 LSLEGHQWKIRAALRAGDWKLVRQGVEAMPPSLRDDATWTYWLARALREEGKRDEANALM 363

Query: 380 ESIAPNFSFYGQLALEELGQKISIPPGPTPPGAGEVALYSQNAGFRRSLKFYQLNLRFEA 439
           +SIA   +FYGQLALEELGQKI+IPP  TP    E+A  + N GFRR+ KF+ L LRFE 
Sbjct: 364 QSIASQTNFYGQLALEELGQKITIPPRATPVTEEEIAPMAANQGFRRAFKFFDLGLRFEG 423

Query: 440 IREWNWELRNMNDRQLLAAAEYARQNDVLDRMVNTSDRTKSEFDFTQRFPAPHLPEMNAA 499
            REWNWELR MN+RQ LAAAE+AR+++VLDRMVNTSDRTK E DFTQRFP+P+   M  A
Sbjct: 424 YREWNWELRKMNERQHLAAAEFARRSEVLDRMVNTSDRTKIEVDFTQRFPSPYRDVMRTA 483

Query: 500 TRPLGMENAWVYGLIRQESRFIKSARSHVGASGLMQLMPATAKFVAKKIGMSEFTVDQVN 559
           T+ LG+E AWVYGLIRQESRFI  ARSHVGASGLMQLMPATA+ VAKKIGM+++   QVN
Sbjct: 484 TQKLGLEMAWVYGLIRQESRFIMDARSHVGASGLMQLMPATARHVAKKIGMTDYAHSQVN 543

Query: 560 DINTNLLLGTSYLDMVLNNLDGSETLATAGYNAGPGRPRTWRASLPRPVEGAIFAEIIPF 619
           +I TN+LLGTSYL+MVLN+L GS+TLATA YNAGPGRPR WR++L RPVEGAIFAE IPF
Sbjct: 544 EIETNILLGTSYLNMVLNDLGGSQTLATAAYNAGPGRPRAWRSTLTRPVEGAIFAESIPF 603

Query: 620 NETRGYVKNVMSNATYYAAMFENRPQSLKQRMGTVAPNSNVATDLP 665
           +ETR YVK V+SNATYYAAMFE++PQSLK R+G+V P + V TDLP
Sbjct: 604 SETRDYVKKVLSNATYYAAMFESKPQSLKDRLGSVTPTAFVPTDLP 649


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,423,262
Number of extensions: 56375
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 576
Effective length of database: 891,988
Effective search space: 513785088
Effective search space used: 513785088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)