BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4133.p
         (277 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980147|ref|YP_001351901.1| methylase of polypeptide chain ...   351   2e-98
gi|152981411|ref|YP_001353763.1| N5-glutamine S-adenosyl-L-methi...    87   1e-18

>gi|152980147|ref|YP_001351901.1| methylase of polypeptide chain
           release factors [Janthinobacterium sp. Marseille]
          Length = 280

 Score =  351 bits (901), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/268 (66%), Positives = 211/268 (78%), Gaps = 1/268 (0%)

Query: 8   AGCTLATVLKTAPLEPLENRILLCHALRLTRVQLITQSERRLDAAESERLTALYARRLRG 67
           AG T+A V++ AP+  LE RILL +  RL+RVQLITQ+ER L A E+++L+ L+ARRL G
Sbjct: 10  AGTTVAAVMQRAPVAQLEARILLGYVTRLSRVQLITQAERALTAEEAQQLSQLFARRLAG 69

Query: 68  EPIAYIVGWREFYGLDLRVTPDVLIPRPDTELLVELAMERLPQAGSLLDMGTGSGAIAIA 127
           EPIAY+ G REF+GL   V+P VLIPRPDTELLVELA+  LP  G +LDMGTGSGAIA+A
Sbjct: 70  EPIAYLTGEREFFGLSFDVSPAVLIPRPDTELLVELALHYLPPQGRVLDMGTGSGAIAVA 129

Query: 128 IAHTRADAAVTALDASAAALAIARENASTHQVRVRLLESDWYGALASEEQFDVIASNPPY 187
           IAH R DA VTALD SA ALAIA  NA  +QV+V  L SDW+ A+  E++FD+I SNPPY
Sbjct: 130 IAHARPDAFVTALDVSAEALAIAEGNARKNQVQVNFLRSDWFSAV-KEQRFDLIVSNPPY 188

Query: 188 IVAGDLHLSQGDLRFEPLDALTDHADGLCDLRTIIDGAPAHLKAGGWLLMEHGYDQATAV 247
           IVAGD HLS+GDLRFEP+DALTDHA+GL DL+TI   A  +L    WLLMEHGYDQA AV
Sbjct: 189 IVAGDPHLSEGDLRFEPVDALTDHANGLSDLQTITRDAARYLAPAAWLLMEHGYDQAAAV 248

Query: 248 RALLAGTGFTDVQSWRDLAGIERVSGAR 275
           R +LA  GFT+VQSWRDLAGIERVSG +
Sbjct: 249 RDVLATHGFTEVQSWRDLAGIERVSGGK 276


>gi|152981411|ref|YP_001353763.1| N5-glutamine
           S-adenosyl-L-methionine-dependent methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 296

 Score = 87.0 bits (214), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 14/232 (6%)

Query: 29  LLCHALRLTRVQLITQSERRLDAAESERLTALYARRLRGE-PIAYIVGWREFYGLDLRVT 87
           L+ H L+L   +L    + RL   E + +  +  +R     P AYI       G    V 
Sbjct: 43  LILHTLKLPLDKLDPFFDARLLQEEVDAVLRVIEQRADERLPAAYITNEGWLGGYRFYVD 102

Query: 88  PDVLIPRPDTELLVELAMERLP-------QAGSLLDMGTGSGAIAIAIAHTRADAAVTAL 140
             V++PR     + EL  E+         +  ++L++ TGSG + I +A    +A V A+
Sbjct: 103 ERVIVPR---SFIAELIPEQFSPWVSNPDKVNNILELCTGSGCLPIMLADAFPNAHVDAV 159

Query: 141 DASAAALAIARENASTHQV--RVRLLESDWYGALASEEQFDVIASNPPYIVAGDLHLSQG 198
           D S  AL +A+ N   +++  R+ L+ESD Y A   E +FD+I +NPPY+ +G +     
Sbjct: 160 DISTDALEVAKRNVEEYELGHRINLIESDLY-ANVPEYKFDLIITNPPYVNSGSMDKLPP 218

Query: 199 DLRFEPLDALTDHADGLCDLRTIIDGAPAHLKAGGWLLMEHGYDQATAVRAL 250
           +   EP  AL    DG+  +R I+ GA   L   G L++E G ++  A  A 
Sbjct: 219 EYLREPQIALAGGTDGMDLVRKIVAGAGQRLTPNGLLMVEIGNEREFAEAAF 270


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 614,395
Number of extensions: 24115
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 195
Effective length of database: 917,867
Effective search space: 178984065
Effective search space used: 178984065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)