BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4132.p
         (164 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980687|ref|YP_001351902.1| disulfide bond formation protei...   139   7e-35

>gi|152980687|ref|YP_001351902.1| disulfide bond formation protein
           [Janthinobacterium sp. Marseille]
          Length = 157

 Score =  139 bits (351), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 106/157 (67%)

Query: 1   MKSSKPVFLLVALVCAGLLGFAMYLQIVEEMQPCPLCVIQRYMFLLVGIFALIGVVLPAS 60
           MK+SKPV L VA V   LL  A+YLQ VE M PCPLCVIQRY F  + I  LI V LP  
Sbjct: 1   MKNSKPVLLAVAFVSLALLAVALYLQHVEGMLPCPLCVIQRYAFAAIAIICLIAVYLPRG 60

Query: 61  ARRPSAALGLLAALGGAGTAIWHLYVKAHPGVSCTTDPLETTLNHLPMVKLWPPMFTADG 120
           A + + AL  L+A+ GAG A WH+Y+KA+P VSC  DPLET+LN +P  KL P +F ADG
Sbjct: 61  AAKVATALAALSAIAGAGVAGWHIYIKANPTVSCGIDPLETSLNTIPTAKLLPFLFQADG 120

Query: 121 FCSAPWPPVLGLQIPTWSLIWFALLAIVLAVQAFKRS 157
            C+  + P+LGL +P W+L+WFA++A  L     K++
Sbjct: 121 LCTTEYAPILGLSLPQWALVWFAVIATYLIYTTVKKN 157


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.141    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 293,976
Number of extensions: 9386
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 88
Effective length of database: 940,049
Effective search space: 82724312
Effective search space used: 82724312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)