BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4131.p
         (359 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980137|ref|YP_001351903.1| peptide chain release factor 1 ...   656   0.0  
gi|152980486|ref|YP_001352951.1| peptide chain release factor 2 ...   225   3e-60

>gi|152980137|ref|YP_001351903.1| peptide chain release factor 1
           [Janthinobacterium sp. Marseille]
          Length = 360

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/358 (87%), Positives = 337/358 (94%)

Query: 1   MKPSMLAKLDQLAERLEELNSLLAQEDATASMDNFRKMTREHAELGPLVALYHDYVQANE 60
           MKPSMLAKLDQL ERL+ELN LL QEDAT++MDN+RKMTREHAELGPLVALY +Y QA+ 
Sbjct: 1   MKPSMLAKLDQLTERLDELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYRQADS 60

Query: 61  DIRTAQELLSDPDMKLFAQEEIDAAKARMQALELDLQKMLLPKDPNDERNIFLEIRAGTG 120
           DI+ AQ +LSDPDMK FAQEEI AAK RM+ LE+DLQKMLLPKDPND+RNIFLEIRAGTG
Sbjct: 61  DIQDAQGMLSDPDMKEFAQEEIAAAKTRMEQLEIDLQKMLLPKDPNDDRNIFLEIRAGTG 120

Query: 121 GDESALFAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIVGFGAYSRLKFESG 180
           GDE+ALFAGDLLRMY+R+AER RWQ+E+VS S SE+GGYKEVI RI+GFGAYS+LKFESG
Sbjct: 121 GDEAALFAGDLLRMYSRFAERNRWQIEMVSESASEVGGYKEVIVRIIGFGAYSKLKFESG 180

Query: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKT 240
           GHRVQRVPATETQGRIHTSACTVA+MPEADEVEDV+INPAD+RIDTYRASGAGGQHINKT
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAIMPEADEVEDVNINPADLRIDTYRASGAGGQHINKT 240

Query: 241 DSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQSKEAATRKSLIGS 300
           DSAVRITH+PTGIVVECQDDRSQHKNKA A+KVLAARIKDVQLR+QQSKEAATRKSLIGS
Sbjct: 241 DSAVRITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGS 300

Query: 301 GDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLDELTNALITEHQAELLAQLGD 358
           GDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDL ELTNAL  EHQAELLA LGD
Sbjct: 301 GDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLTELTNALAAEHQAELLAALGD 358


>gi|152980486|ref|YP_001352951.1| peptide chain release factor 2
           [Janthinobacterium sp. Marseille]
          Length = 367

 Score =  225 bits (574), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 134/348 (38%), Positives = 205/348 (58%), Gaps = 28/348 (8%)

Query: 9   LDQLAERLEELNSLLAQEDATASMDNFRKMTREHAELGPLVALYHDYVQANEDIRTAQEL 68
            D  +E+L+++N  L   D        + + +E   L  +V   H  ++ + ++  A++L
Sbjct: 29  FDVKSEKLDQVNGELEDPDVWNDQKRAQDLGKEKKSLEAIV---HTLIKIDSELNDARDL 85

Query: 69  LSDPDMKLFAQEEIDAAKARMQALELDLQKML----------LPKDPNDERNIFLEIRAG 118
                    A+EE D  +  + A+E D Q++L          +  +P D  N F++I+AG
Sbjct: 86  FE------MAREEKD--EDTIVAIENDAQELLKLVEGMEFRRMFSNPMDANNCFIDIQAG 137

Query: 119 TGGDESALFAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIVGFGAYSRLKFE 178
            GG E+  +A  LLR Y RY ER+ ++VEI+  S+ E+ G K    ++ G  AY  L+ E
Sbjct: 138 AGGTEAQDWASMLLRQYLRYCERKGFKVEILEQSDGEVAGIKTATLKVEGDYAYGFLRTE 197

Query: 179 SGGHR-VQRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHI 237
           +G HR V++ P     GR HTS  ++ V PE D+  ++DINPAD+RIDTYRASGAGGQHI
Sbjct: 198 TGVHRLVRKSPFDSANGR-HTSFSSLFVYPEVDDSIEIDINPADVRIDTYRASGAGGQHI 256

Query: 238 NKTDSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQSKEAATR--K 295
           NKTDSAVR+TH P+GIVV+CQ+DRSQH+NKA+A  +L A++ ++++R + S++      K
Sbjct: 257 NKTDSAVRLTHGPSGIVVQCQNDRSQHRNKAEAWDMLKAKLFELEMRNRMSEQQKLEDSK 316

Query: 296 SLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLDELTNA 343
           + +G G    +IR+Y   Q R+ D R N        ++DGDLD+   A
Sbjct: 317 TDVGWG---HQIRSYVLDQSRIKDLRTNFETGNTKAVLDGDLDDFIAA 361


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 797,835
Number of extensions: 31712
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 275
Effective length of database: 910,473
Effective search space: 250380075
Effective search space used: 250380075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)