BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4130.p
         (430 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980314|ref|YP_001351904.1| glutamyl-tRNA reductase [Janthi...   727   0.0  

>gi|152980314|ref|YP_001351904.1| glutamyl-tRNA reductase
           [Janthinobacterium sp. Marseille]
          Length = 429

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/430 (81%), Positives = 399/430 (92%), Gaps = 1/430 (0%)

Query: 1   MHLLAVGLNHTTAPLSLREKVAFPADQIGQAVASARAWFGGNDKIVAAGEAAILSTCNRT 60
           M LLAVGLNHTTAP+SLREKVAFPADQ+GQAVASAR+W+G +D      EAAILSTCNRT
Sbjct: 1   MQLLAVGLNHTTAPVSLREKVAFPADQLGQAVASARSWYGRSDATTYTDEAAILSTCNRT 60

Query: 61  ELYAAAAAGRDGVEFAIDRTAQFLAEYHQIAYADLRPYLYSLPQDNAVRHAFRVASGLDS 120
           ELYAA+     GV  AID TA FLA+YH++ YA+LRPYLY+LPQDNAVRHAFRVASGLDS
Sbjct: 61  ELYAASNLP-GGVNEAIDITAHFLADYHKLPYAELRPYLYALPQDNAVRHAFRVASGLDS 119

Query: 121 MVLGEPQILGQMKDAVRQADAAGGLGTYLHQLFQRTFAVAKEVRTTTEIGAHSVSMAAAA 180
           MVLGEPQILGQMKDAVRQA+AAGGLGTYLHQ+FQRTFAVAKEVR+TTEIGAHSVSMAAA+
Sbjct: 120 MVLGEPQILGQMKDAVRQAEAAGGLGTYLHQMFQRTFAVAKEVRSTTEIGAHSVSMAAAS 179

Query: 181 VRLSQRIFDSITGQNVLFIGAGEMIELCATHFAAQNPKTLTVANRTMERGETLAHRFSGR 240
           VRLSQRIFD I+ QNVLFIGAGEMIEL ATHFAAQNPK++T+ANRT+ERG+TLAHRF+G+
Sbjct: 180 VRLSQRIFDKISEQNVLFIGAGEMIELSATHFAAQNPKSVTIANRTLERGQTLAHRFNGK 239

Query: 241 AIRLADLPAQLANFDIVVSCTASQLPIIGLGLVERAVKARRHKPIFMVDLAVPRDIEAEV 300
           AIRLADLP QLA++DIV+S TAS LPIIGLG+VERA+KARRHKP+FMVDLAVPRDIEAE+
Sbjct: 240 AIRLADLPDQLASYDIVISSTASSLPIIGLGMVERAIKARRHKPMFMVDLAVPRDIEAEI 299

Query: 301 GRLDDVFLYTVDDLASVVQSGVENRQAAVAQAEAIIETRVQSFMHWIDSRAMVPLIQDLQ 360
           GRLDDVFLYTVDDL S VQ+GVENRQAAVAQAEAIIETRV+SFMHWID+RA+VP+IQDL 
Sbjct: 300 GRLDDVFLYTVDDLGSFVQTGVENRQAAVAQAEAIIETRVRSFMHWIDARAVVPVIQDLH 359

Query: 361 ETGEALRLAELDRARRMLAKGDDVEAVLEALSKGLTAKFLHGPQQALHHAQGEQRSQLAA 420
           E+ E +R+ EL+RAR++LAKG+D++AVLEALSKGLTAKFLHGPQQAL++AQG++R++LAA
Sbjct: 360 ESSETMRMIELERARKLLAKGEDIDAVLEALSKGLTAKFLHGPQQALNNAQGDERARLAA 419

Query: 421 LLPQLFRAKR 430
           LLPQLFR KR
Sbjct: 420 LLPQLFRTKR 429


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 877,101
Number of extensions: 33528
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 344
Effective length of database: 903,079
Effective search space: 310659176
Effective search space used: 310659176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)