BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4129.p (233 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981417|ref|YP_001351907.1| two-components system response ... 135 3e-33 gi|152981484|ref|YP_001354521.1| two-components system response ... 91 6e-20 gi|152983081|ref|YP_001353282.1| two-component response regulato... 85 5e-18 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 68 6e-13 gi|152981180|ref|YP_001353103.1| osmolarity response regulator [... 67 8e-13 >gi|152981417|ref|YP_001351907.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 135 bits (339), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 65/137 (47%), Positives = 96/137 (70%), Gaps = 3/137 (2%) Query: 96 AGADDFLVKPVRRQELALRLDLLLLAAQPYEAPPNIVEAAGFVVDLARLRVTHPARPDLD 155 AGADD+++KP+RR EL R+ LL A P + P ++ F+ + R+T P Sbjct: 94 AGADDYMIKPIRRGELLARVQALLRRAYPSQNPIEQIQFGNFIFEARTGRLTMSGAP--- 150 Query: 156 ATLTRKEAELALLFMQHLGRPLSRAFLLERIWGNEQETPTRTIDTHVSRIRTKLGLQPSN 215 +T+KE +LALLF ++LGRPLSRA++LE +W + E P+RT+DTHVSR+R+KL L+P + Sbjct: 151 IEVTQKEFDLALLFFRNLGRPLSRAYILEAVWARDVEIPSRTMDTHVSRVRSKLQLRPEH 210 Query: 216 GYQLATVYGYGYQLEKL 232 G++LA VY YGY+LE++ Sbjct: 211 GFRLAPVYSYGYRLEQM 227 >gi|152981484|ref|YP_001354521.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 235 Score = 90.9 bits (224), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 11/146 (7%) Query: 95 LAGADDFLVKPVRRQELALRLDLL------LLAAQPYEAPPNI--VEAAGFVVDLARLRV 146 +AGADD++ KP+R EL+ R+ L + A P VE F DL R Sbjct: 93 MAGADDYMTKPIREAELSARIHALSKRIRHVSENDAAVAVPQATAVEVGIFHFDLLRKIA 152 Query: 147 THPARPDLDATLTRKEAELALLFMQHLGRPLSRAFLLERIWGNEQETPTRTIDTHVSRIR 206 T P L KE ++A LF Q++G+ +SR ++E +WG E +RT+DTH+S++R Sbjct: 153 TIRGEP---VDLKPKEFDIAALFFQNIGQLISRERIMEEVWGRELMMTSRTLDTHMSQVR 209 Query: 207 TKLGLQPSNGYQLATVYGYGYQLEKL 232 TKL L+ N +L TVY GY+L+ Sbjct: 210 TKLQLKLDNNVRLTTVYTIGYRLDTF 235 >gi|152983081|ref|YP_001353282.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 235 Score = 84.7 bits (208), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 108/215 (50%), Gaps = 20/215 (9%) Query: 25 TTVYTGAEGFAAACDDGAHLMVLD--LDDLQRHPHAITTIVHDHRPPVRSKVRPLVLLIC 82 TT TG +A +D L++L+ L D+ ++ + + + +VL C Sbjct: 28 TTFMTGKAMISALANDMYDLLILNWNLQDISGME-----VIRWVKESAGNDISVIVLADC 82 Query: 83 TPAHQHWLRNLRLAGADDFLVKPVRRQELALRLDLLLLAAQ---PYEAPP-----NIVEA 134 A + + + +AGADD + KP R ELA R+ L + E P + +E Sbjct: 83 --AREDEIVEILMAGADDCIRKPFRDAELAARIHALTKRGRRPLTIEVPSTAQKVSKIEV 140 Query: 135 AGFVVDLARLRVTHPARPDLDATLTRKEAELALLFMQHLGRPLSRAFLLERIWGNEQETP 194 + DL LR T R + L KE ++A+LF +++G +SR ++ IWG + + Sbjct: 141 GVYYFDL--LRRTVSVRGE-QIDLKPKEFDMAVLFFKNIGMQISREQIMAEIWGRKTDIY 197 Query: 195 TRTIDTHVSRIRTKLGLQPSNGYQLATVYGYGYQL 229 +R++DTH S++R+KL L N +L +++ +GYQL Sbjct: 198 SRSLDTHASQLRSKLRLNSENQVRLISIHSFGYQL 232 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 67.8 bits (164), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 99/211 (46%), Gaps = 27/211 (12%) Query: 30 GAEGFAAACDDGAHLMVLD-----LDDLQRHPHAITTIVHDHRPPVRSKVR--PLVLLIC 82 GAEG A + L++LD LD Q ++ + R KVR P++ L Sbjct: 33 GAEGLQLALQESYELVILDVMLPLLDGWQ--------LLRELR-----KVRDTPVLFLTA 79 Query: 83 TPAHQHWLRNLRLAGADDFLVKPVRRQELALRLDLLLLAAQPYEAPPNIVEAAGFVVDLA 142 + ++ L L GADD+LVKP EL R+ LL E+ +++E A +D+ Sbjct: 80 RDEVEDRVKGLEL-GADDYLVKPFSFMELIARVRTLLRRGPVRES--SLIEIADMQIDVM 136 Query: 143 RLRVTHPARPDLDATLTRKEAELALLFMQHLGRPLSRAFLLERIWGNEQETPTRTIDTHV 202 + RVT LD LT KE L L Q G LSR+ + ++W ++ T +D + Sbjct: 137 KRRVTRNGER-LD--LTAKEFSLLHLLAQRRGEVLSRSLIASQVWDMNFDSDTNVVDVAI 193 Query: 203 SRIRTKLGLQPSNGYQLATVYGYGYQLEKLE 233 R+R KL P + TV G GY LE+ E Sbjct: 194 RRLRAKLD-DPHPRKLIQTVRGIGYVLEEGE 223 >gi|152981180|ref|YP_001353103.1| osmolarity response regulator [Janthinobacterium sp. Marseille] Length = 248 Score = 67.4 bits (163), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 10/158 (6%) Query: 76 PLVLLICTPAHQHWLRNLRLAGADDFLVKPVRRQELALRLDLLLLAAQPYEAP------P 129 P+++L + L + GADD+L KP +EL R+ +L P E P P Sbjct: 86 PIIMLTAKGEDVDRIVGLEM-GADDYLAKPFNPRELVARISAVLRRVGPEEIPGAPSETP 144 Query: 130 NIVEAAGFVVDLARLRVTHPARPDLDATLTRKEAELALLFMQHLGRPLSRAFLLERIWGN 189 FV+DL + + D LT E + +F +H +PLSR L+E G Sbjct: 145 QSFTFGEFVLDLGTRTL---KKNDETVPLTTGEFSVLKVFARHARQPLSREKLMELARGR 201 Query: 190 EQETPTRTIDTHVSRIRTKLGLQPSNGYQLATVYGYGY 227 E E R++D +SR+R + PS + TV+G GY Sbjct: 202 EYEVFDRSLDVQISRLRKLIEPDPSTPLYIQTVWGLGY 239 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 529,302 Number of extensions: 19622 Number of successful extensions: 92 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 85 Number of HSP's successfully gapped: 13 Length of query: 233 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 153 Effective length of database: 925,261 Effective search space: 141564933 Effective search space used: 141564933 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)