BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4127.p
         (271 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980103|ref|YP_001352864.1| septum site-determining protein...   496   e-142

>gi|152980103|ref|YP_001352864.1| septum site-determining protein
           [Janthinobacterium sp. Marseille]
          Length = 271

 Score =  496 bits (1276), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/271 (88%), Positives = 258/271 (95%)

Query: 1   VAKIIVVTSGKGGVGKTTSSASFASGLAMRGHKTAVIDFDVGLRNLDLIMGCERRVVYDL 60
           +AKIIVVTSGKGGVGKTTSSASFASGLAMRGHKT VIDFDVGLRNLDLIMGCERRVVYDL
Sbjct: 1   MAKIIVVTSGKGGVGKTTSSASFASGLAMRGHKTVVIDFDVGLRNLDLIMGCERRVVYDL 60

Query: 61  INVINKEATLNQALIKDKHCDNLFILPASQTRDKDALTEEGVERVLGDLSKMDFEYIICD 120
           INV+NKEATLNQALIKDKHCDNLF+LPASQTRDKDAL+E+GVERVL DL+ MDFE+IICD
Sbjct: 61  INVVNKEATLNQALIKDKHCDNLFVLPASQTRDKDALSEDGVERVLQDLAAMDFEFIICD 120

Query: 121 SPAGIEHGAVMALTFADEAIVVSNPEVSSVRDSDRILGIIQAKSRRASSGGEPVKEHLLI 180
           SPAGIEHGAVMALTFADEAI+V+NPEVSSVRDSDRILGIIQAKSRRA +GGEPVKEHLLI
Sbjct: 121 SPAGIEHGAVMALTFADEAIIVTNPEVSSVRDSDRILGIIQAKSRRALNGGEPVKEHLLI 180

Query: 181 TRYSPKRVEDGEMLSYTDVQEILRIPLIGIIPESETVLQASNQGSPAIHMKDSDVAQAYQ 240
           TRY PKRVE GEMLSYTDVQEILRIPL+GIIPESE+VL ASN G+PAIH++ S+V++AY+
Sbjct: 181 TRYVPKRVEAGEMLSYTDVQEILRIPLVGIIPESESVLHASNAGNPAIHIEGSEVSEAYK 240

Query: 241 DVVSRFLGETVELRFTTYEKPGLLQRIFGGK 271
           DVVSRFLGE V LRFT YEKPG LQRIFGGK
Sbjct: 241 DVVSRFLGEDVPLRFTDYEKPGFLQRIFGGK 271


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.135    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 562,580
Number of extensions: 22189
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 189
Effective length of database: 917,867
Effective search space: 173476863
Effective search space used: 173476863
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)