BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4125.p
         (379 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981085|ref|YP_001353362.1| ABC-type transport system, peri...   330   1e-91
gi|152981540|ref|YP_001355255.1| ABC-type transport system, peri...   122   3e-29

>gi|152981085|ref|YP_001353362.1| ABC-type transport system,
           periplasmic component/surface lipoprotein
           [Janthinobacterium sp. Marseille]
          Length = 366

 Score =  330 bits (845), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 164/378 (43%), Positives = 232/378 (61%), Gaps = 15/378 (3%)

Query: 1   MKISRRASLTMLATLAAATLIGCGKKEEPAAAAPAAAPAAAAPATDPLKVAFVYIGPVGD 60
           ++ +RR  L  L+ L   T IG                A  A A + LKVA  Y+ P+GD
Sbjct: 2   LRDTRRDFLKQLSALGLTTAIG--------------GRAMDAFADEVLKVAVAYVSPIGD 47

Query: 61  AGWTFAHDKGRKAVEEKFGDKVKTTFVENIPESAADAERVFRQLATDGNKLIFGTTFGYM 120
            GWT  HD  R+A+E  F  K+K   VE + + A DAERVFR LA  GNKLIFGT+F +M
Sbjct: 48  VGWTKQHDLARQAMEAAFPGKIKVVKVEGVSQ-AQDAERVFRDLAVQGNKLIFGTSFSHM 106

Query: 121 EAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVASV 180
             MLKVA+  P   FE  +G KT  N+  ++ R YEG YLAG+VAGKMSKS  LG +   
Sbjct: 107 TPMLKVAQSMPKTTFELCSGIKTLKNMGAFEARYYEGTYLAGIVAGKMSKSNVLGFIGGF 166

Query: 181 PIPEVIRNIDSFTLGARSVNPKATTAVVWVNKWFDPGKEREAATTLIGQGVDVLMQNTDS 240
           P+P+++   ++F LGARSVNPK T  V+W++ W+DP KER+AA  LI +G DV+   TD+
Sbjct: 167 PVPDILGPANAFLLGARSVNPKVTCKVIWLSSWYDPAKERDAANALISEGADVVSSMTDT 226

Query: 241 AAVVQTAQEKGVYAFGWDSDMTSFGPKAHLAASMINWGVYYTARVQAVLDGTWKSSTSWI 300
              +Q  +EKGV+  G+ SDM+ +GPK HL + +++W   Y    ++V+DGTWKSS  W 
Sbjct: 227 PTTIQVGEEKGVWTVGYASDMSKYGPKKHLTSFIVDWRSEYINAARSVMDGTWKSSHRWD 286

Query: 301 GLKDNGIDLAAFNPELPAEVKTLVEERKKAIIDGSAPIWKGPIKDNTGKEVLGKDAVADD 360
           GLK   + +  +NP +P +V T V ++++AII G+   + GP++D +GKE +   +   D
Sbjct: 287 GLKSGVVKMGPYNPAIPKDVLTYVAQQEQAIIAGTLHPFAGPLRDQSGKERVAAGSALPD 346

Query: 361 GFLHGIKFYVEGVDGKVP 378
             L  I ++VEG+ G +P
Sbjct: 347 DQLKSINWFVEGMQGNLP 364


>gi|152981540|ref|YP_001355255.1| ABC-type transport system,
           periplasmic component/surface lipoprotein
           [Janthinobacterium sp. Marseille]
          Length = 329

 Score =  122 bits (307), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 153/332 (46%), Gaps = 26/332 (7%)

Query: 1   MKISRRASLTMLATLAAATLIGCGKKEEPAAAAPAAAPAAAAPATDPLKVAFVYIGPVGD 60
           MK SRR  L  +AT A A  +  G            AP A A   DP+K+  +  G   D
Sbjct: 1   MKTSRRTFLKTVATSAGAGTLAYG-----------LAPFAMA--ADPIKIGILMPGSKLD 47

Query: 61  AGWTFAHDKGRKAVEEKFGDKVKTTFVENIPESAADAERVFRQLATDGNKLIFGTTFGYM 120
            GW  +   G K  E ++G KVK +F+EN+     D E+V   LA+  N L+ G      
Sbjct: 48  HGWMESAYNGIKRAEARYGSKVKISFIENV--KFGDMEQVLVSLASK-NDLVIGAAGQTQ 104

Query: 121 EAMLKVAKEFPDVKFEHA--TGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVA 178
            ++LKVA+ FP VKF     TG  T+ N+AQYDV   +  ++AG VA   SK+G +  V 
Sbjct: 105 ASVLKVAQRFPKVKFSIVGPTGTPTS-NVAQYDVLQAQIGFIAGAVAAMSSKNGAVSYVG 163

Query: 179 SVPIPEVIRNIDSFTLGARSVNPKATTAVVWVNKWFDPGKEREAATTLIGQGVDVL--MQ 236
              IP ++     F  GAR V P       +   + D  K +EA    IGQG DV   + 
Sbjct: 164 GAEIPAIVNTGKEFGNGARYVKPDIKYFETYTGDFDDVTKAKEATLAAIGQGADVHYNIL 223

Query: 237 NTDSAAVVQTAQEKGVYAFGWDSDMTSFGPKAHLAASMINWGVYYTARVQAVLDGTWKSS 296
           N     + Q A++K     G  ++  +     +LA ++   G      +  ++ GTWK  
Sbjct: 224 NLGVRGMEQAARDKNTRMIGSYTNYCADKNPLYLAYTVSGIGFMLEYAIDQMVAGTWKPE 283

Query: 297 TSWIGL----KDNGIDLA-AFNPELPAEVKTL 323
               GL    +  GI++     P++ A+V+ +
Sbjct: 284 YKPFGLAMGPQSAGIEVCGGMTPQMQAKVREI 315


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 862,269
Number of extensions: 36165
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 294
Effective length of database: 906,776
Effective search space: 266592144
Effective search space used: 266592144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)