BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4123.p
         (364 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980963|ref|YP_001353368.1| transmembrane ABC transporter p...   403   e-113
gi|152981332|ref|YP_001355253.1| ABC-type uncharacterized transp...    86   3e-18

>gi|152980963|ref|YP_001353368.1| transmembrane ABC transporter
           protein [Janthinobacterium sp. Marseille]
          Length = 364

 Score =  403 bits (1035), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/356 (58%), Positives = 267/356 (75%), Gaps = 4/356 (1%)

Query: 9   LRLELRGAPSQTMTYLSPVIAIIATLLLGALLFLALGKDPLAGLKVFLVDPFNGKRAISE 68
           L+LE R  PS+ ++++SPV+A++ T L GA+LF  LGKDPLAGL VF ++P       SE
Sbjct: 2   LKLEARARPSRLISWMSPVLAVLLTALCGAVLFALLGKDPLAGLAVFFLEPLKDLHGWSE 61

Query: 69  LLLKSVPLILCALGLVVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGHGISGGMGLV 128
           + +K  PL++ + GL +CFRA+++NIGAEGQ   GA+  GA+ ++ D    G  GG  ++
Sbjct: 62  VGVKVAPLLMISAGLAICFRANVFNIGAEGQLVFGAIAGGAVGLYFD---KGSGGGPLMI 118

Query: 129 LMVL-AGIVGGALWAAITAFLRDHFNANEILVSLMLTYVAQLLLMWAVNGPLKDPNGMNF 187
            +VL AG++GG  WAAITAFLRD FNA+EILVSLML YVAQLLL + V G  KDP+G NF
Sbjct: 119 TVVLIAGMLGGMAWAAITAFLRDRFNASEILVSLMLVYVAQLLLSYLVQGVFKDPDGFNF 178

Query: 188 PQSKVFSSEFMLPMLMSGTRLHVGFAVTLVAAVLMAIFMMRSLRGFSLMVGGVAPHAARY 247
           PQS++FS  F+LP++M GTRLH+G  + L+AA    +F+ +S  GF L  GG+AP AA Y
Sbjct: 179 PQSRMFSEGFVLPIIMEGTRLHLGIVLALIAAFAAWLFLSKSYAGFRLQTGGMAPRAALY 238

Query: 248 AGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHPIG 307
           AGFS+R ALW SL+I GA +GLAG  E+ GPIGQL PSVSPGYGFAAIIVA++GRL+PIG
Sbjct: 239 AGFSSRKALWTSLMICGALSGLAGVCEVLGPIGQLTPSVSPGYGFAAIIVAYVGRLNPIG 298

Query: 308 AILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLVWHKK 363
            I    IM+L Y+GGEL+QSRLG+P+AITGVFQG+LLF LLACD LI+Y+L W   
Sbjct: 299 VIFSSFIMALFYIGGELSQSRLGIPNAITGVFQGILLFSLLACDVLINYKLRWDSS 354


>gi|152981332|ref|YP_001355253.1| ABC-type uncharacterized transport
           system, permease component [Janthinobacterium sp.
           Marseille]
          Length = 365

 Score = 86.3 bits (212), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 165/347 (47%), Gaps = 16/347 (4%)

Query: 21  MTYLSPVIAIIATLLLGALLFLALGKDPLAGLKVFLVDPFNGKRAISELLLKSVPLILCA 80
           M  + PV+A +  LLLG  L           ++ F       +  I   + +S+ L L  
Sbjct: 23  MKVIVPVLATVVALLLGVALIACTDSSVSEAIEAFWDGMVGSEYNIGASINRSISLGLVG 82

Query: 81  LGLVVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGHGISG---GMGLVLMVLAGIVG 137
           LG +   RA++ N+G EGQ  +G + + AM +      HG      G+  +L +LAG +G
Sbjct: 83  LGFIFANRANLTNVGGEGQIAIGGMLATAMAL------HGAGNLPFGLAFILPMLAGTLG 136

Query: 138 GALWAAITAFLRDHFNANEILVSLMLTYVAQLLLMWAVNGP--LKDPNGM--NFPQSKVF 193
           GALW  +   L+     NE++ +L+LT++A  L+ W+V     L+ P       P+S + 
Sbjct: 137 GALWGGLAGALKSWRGINEVISTLLLTFIALPLVYWSVESVHLLRKPMTQVSALPESMII 196

Query: 194 SSEFMLPMLMSG---TRLHVGFAVTLVAAVLMAIFMMRSLRGFSLMVGGVAPHAARYAGF 250
                LPML      + LH+G  + ++A + + I + R+  G  L   G+   A+R AG 
Sbjct: 197 PDATKLPMLFPSNPMSPLHIGLILAVIAVIAVGIVLSRTPFGLKLRAVGLNQMASRRAGM 256

Query: 251 SARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHPIGAIL 310
            +   + +++ I+G F GLAGA  I G    L    S GYGF  ++V  + R    G ++
Sbjct: 257 RSGFLVVLAMAIAGGFGGLAGAIMIQGQQYYLTSDFSSGYGFDGLVVGLLSRGSAWGVVV 316

Query: 311 GGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYR 357
           G L+   L  G    +    +P+A+  + QG+++  +      +D +
Sbjct: 317 GALLFGFLRSGSIAMEIMAHVPAAVVLISQGLIVIAIAGSAIFMDRK 363


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.144    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 782,664
Number of extensions: 30899
Number of successful extensions: 197
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 4
Length of query: 364
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 280
Effective length of database: 910,473
Effective search space: 254932440
Effective search space used: 254932440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)