BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4122.p (516 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATP... 667 0.0 gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transp... 297 1e-81 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 128 9e-31 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 123 3e-29 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 114 1e-26 >gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 511 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/500 (68%), Positives = 390/500 (78%), Gaps = 5/500 (1%) Query: 7 RLEISHVRKAYPGVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIRW 66 RLE+ + K YP V+AND ++L+V PGEIHAVLGENGAGKSTLMKII+G+VKPDAG++ W Sbjct: 4 RLELHSITKRYPSVVANDGINLSVKPGEIHAVLGENGAGKSTLMKIIYGSVKPDAGKVLW 63 Query: 67 NGAAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALGLDAKTDLKELAERITRTGEK 126 NG V IANP +AR+LGIAMVFQHFSLFDTLTV ENIALGL T L ELA RI+ T E+ Sbjct: 64 NGKEVHIANPAMARELGIAMVFQHFSLFDTLTVVENIALGLPHDTKLDELARRISDTAEQ 123 Query: 127 YGLELEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLTPQAVEKLFVTLRRLA 186 YGLELEPQRHVHTLSVGE QRVEIVRALL +PQLLILDEPTSVLTPQAVEKLF TLR+LA Sbjct: 124 YGLELEPQRHVHTLSVGECQRVEIVRALLAKPQLLILDEPTSVLTPQAVEKLFETLRKLA 183 Query: 187 DEGCSILYISHKLDEIRALCHSATVMRGGRVTGNCDPRNESSASLSRMMIGDELVRLQRE 246 EGCSILYISHKLDEIRALC + TV+R G+ TG CDPR ES+ASLSRMMIG E ++ Sbjct: 184 AEGCSILYISHKLDEIRALCDTCTVVRAGKNTGICDPREESAASLSRMMIGCEPPPIKHV 243 Query: 247 -RNPESMRNERKLHVNRLSLPKAHLFATELKDIECEVRAGEIVGIAGVSGNGQQELLAAL 305 R+P + L V LSL K H FATEL DI E+RAGEI+GIAGVSGNGQQELLAAL Sbjct: 244 LRSP----GQTLLAVKNLSLKKNHPFATELSDINFELRAGEILGIAGVSGNGQQELLAAL 299 Query: 306 SGEDQRAAPNMIMLSGKAVGDLSPNPRRAAGLGLVPEERLGRGAVPTLSLTANMLLSHQK 365 SGED RA MI+L G+ VG +P RR GLG VPEERLGRGAVP +SL N+LLSHQ Sbjct: 300 SGEDPRAEAQMILLQGERVGHFNPAQRRERGLGFVPEERLGRGAVPDMSLADNILLSHQT 359 Query: 366 APYVKRGMIDFGFTRRAAASIIERFKVKAAGPDAPAKSLSGGNLQKFIVGREMERKPAVF 425 + G I + A +IERF VKA GP A A+SLSGGNLQK+IVGRE+ R P V Sbjct: 360 GATISSGFIRKHAIVKMATDVIERFVVKAGGPHAAARSLSGGNLQKYIVGREVMRNPKVL 419 Query: 426 VVAQPTWGVDVGAAAQIHGEILKLKQEGCAVLVISEELDELFALCDRLHVIAKGRLSPSI 485 +VAQPTWGVDVGAAAQI E++ L+ GCA+LVISEELDELF + DRL VIAKGRLSPSI Sbjct: 420 IVAQPTWGVDVGAAAQIRAELVALRDAGCALLVISEELDELFEISDRLMVIAKGRLSPSI 479 Query: 486 PIEQATREQVGVWMSGLWDE 505 AT + +G WMSG+W + Sbjct: 480 ASSAATIDLIGQWMSGMWGD 499 >gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 523 Score = 297 bits (760), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 193/524 (36%), Positives = 292/524 (55%), Gaps = 37/524 (7%) Query: 8 LEISHVRKAYPGVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIRWN 67 LEI+ V K + L +D+SL V GE+H +LGENGAGKSTL +IFG +PDAG I+++ Sbjct: 4 LEIAGVTKRFGSHLVLNDISLNVEAGEVHCLLGENGAGKSTLCNLIFGVHRPDAGLIKYD 63 Query: 68 GAAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALGLDAKTDLKE--LAERITRTGE 125 G + + P A +LGIAMV QHFSL ++V EN+ LG A+ LK+ + R+ + Sbjct: 64 GGEFRPSGPAHALELGIAMVHQHFSLVSNMSVVENLMLG-RAQAILKQDFIIRRMQELAD 122 Query: 126 KYGLELEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLTPQAVEKLFVTLRRL 185 +Y L+++P V LSVGERQR+EI++ LL+ P+LL+LDEPT+VL P+ V+ L R++ Sbjct: 123 EYDLKIDPHCIVGDLSVGERQRIEIIKCLLSNPRLLLLDEPTAVLPPEEVDSLLAVCRKV 182 Query: 186 ADEGCSILYISHKLDEIRALCHSATVMRGGRVTGNCDPRNESSASLSRMMIGDE------ 239 A+ G ++ ++HKL EI + +V+R GR+ + +L R M+G + Sbjct: 183 AESGRGVILVTHKLAEIAKVADRTSVLRQGRIVESVCMEGADMHALVRSMVGRDVKSGDS 242 Query: 240 --------LVRLQRERNPESMRNERKLHVNRLSLPKAHLFA---------TELKDIECEV 282 L ++ + + L LP L T L D+ V Sbjct: 243 VLAATLGILSDAAQDAANATPAAAAVVDSRSLGLPALQLQGLSFQDKDGVTRLSDVHLSV 302 Query: 283 RAGEIVGIAGVSGNGQQELLAALSGEDQRAAPNMIM----LSGKAVGDLSPNPRRAAGLG 338 GEIVGIAGV GNGQ EL A ++G M + L+G + D++ AG G Sbjct: 303 ARGEIVGIAGVEGNGQSELGAIIAGLLTPTGGAMKIGEQDLTGSSAQDITD-----AGAG 357 Query: 339 LVPEERLGRGAVPTLSLTANMLLSHQKAPYVKRGMIDFGFTRRAAASIIERFKVKAAGPD 398 ++PE+R + LS+ N+ L + + + G++D + AA+++ F V+A P+ Sbjct: 358 IIPEDRHAVACISELSVAENLFLGSLE-KFSRFGLLDREKMAKQAATMMTEFDVRATSPN 416 Query: 399 APAKSLSGGNLQKFIVGREMERKPAVFVV-AQPTWGVDVGAAAQIHGEILKLKQEGCAVL 457 AP SLSGGN QK ++ RE+ P +F++ AQPT G+DVGA + I G VL Sbjct: 417 APMSSLSGGNQQKAVLARELSLDPLIFLLAAQPTRGLDVGAVEAVFNRIRTAASNGLGVL 476 Query: 458 VISEELDELFALCDRLHVIAKGRLSPSIPIEQATREQVGVWMSG 501 +IS +L+EL A+ DR+ V+ +G + +P + A RE++G MSG Sbjct: 477 LISSDLNELIAVSDRVAVLYRGAIVGELPADPANREKIGAMMSG 520 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 128 bits (321), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 127/230 (55%), Gaps = 5/230 (2%) Query: 8 LEISHVRKAYPGVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIRWN 67 LEI ++ + + D++SL++ GE +LG +G GK+TL+++I G PDAG+I + Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILLD 63 Query: 68 GAAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALGLD-AKTDLKELAERITRTGEK 126 G + P+ + + VFQ+++LF +TV NIA L+ A T E+ +++ E Sbjct: 64 GVDLTGVPPE---QRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALED 120 Query: 127 YGLELEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLTPQAVEKLFVTLRRLA 186 L R+ H LS G+RQRV I RAL+T P+LL+LDEP S L Q E++ + L L Sbjct: 121 VRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQ 180 Query: 187 DE-GCSILYISHKLDEIRALCHSATVMRGGRVTGNCDPRNESSASLSRMM 235 E G + +Y++H E AL H VM G+V +P S SR + Sbjct: 181 KEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFV 230 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 133/238 (55%), Gaps = 9/238 (3%) Query: 6 LRLEISHVRKAYPGVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIR 65 + +E+ +++K + +A ++VSL GE+ A+LG +G GK+TL++II G +PD G++ Sbjct: 1 MSIEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 66 WNGAAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALGLD-----AKTDLKELAERI 120 +G + A+ + R+ + VFQH++LF +TV ENIA GL + ++ E++ Sbjct: 61 LDG---EDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKV 117 Query: 121 TRTGEKYGLELEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLTPQAVEKLFV 180 T+ E L+ R+ LS G+RQR+ + RAL EP++L+LDEP L + ++L Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 181 TLRRLADE-GCSILYISHKLDEIRALCHSATVMRGGRVTGNCDPRNESSASLSRMMIG 237 LRRL D+ + ++++H +E + +M G V P++ + S + G Sbjct: 178 WLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYG 235 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 20/227 (8%) Query: 8 LEISHVRKAYPGVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIRWN 67 L I+ V K + G+ A DV++ + G+I+ ++G NGAGK+T +I G + D G Sbjct: 7 LNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFELA 66 Query: 68 GAAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALGLDAKT---------------- 111 G + P K GIA FQ+ LF +T EN+ +G +T Sbjct: 67 GKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAARR 126 Query: 112 DLKELAERITRTGEKYGLELEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLT 171 + E+ +R E G+ +R LS G+++R+EI RAL T+PQLL LDEP + + Sbjct: 127 EEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMN 186 Query: 172 PQAVEKLFV--TLRRLADEGCSILYISHKLDEIRALCHSATVMRGGR 216 A EKL + L ++ EG +IL I H + + LC TV+ G+ Sbjct: 187 --ATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGK 231 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,217,767 Number of extensions: 52484 Number of successful extensions: 452 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 342 Number of HSP's successfully gapped: 79 Length of query: 516 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 429 Effective length of database: 899,382 Effective search space: 385834878 Effective search space used: 385834878 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)