BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4121.p (259 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bica... 92 4e-20 gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica... 78 5e-16 gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport sys... 69 4e-13 gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport syst... 62 5e-11 >gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 296 Score = 91.7 bits (226), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 118/241 (48%), Gaps = 5/241 (2%) Query: 19 WFLLIAILGVWQFICSVWEVSDFIFPSPASILQ---AMVEYAGPITQHALSTFWVTMVGF 75 W L +A+LG + + + + P P+ I+Q A++E + H ++ G+ Sbjct: 51 WILPLAVLGFVEVAAQLGWIQARLLPPPSEIVQTLSALLEQG--LLVHISASVARVFSGY 108 Query: 76 AIAVGVGVTLGLVIGSSPMLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGPAILTAFL 135 AI + + GL +G S A P A A+P A+VP+L++WFGI P I + Sbjct: 109 AIGAVLAILFGLFVGLSKHAEAFFEPTFQALRAIPSLAWVPLLLLWFGIDETPKITLIAI 168 Query: 136 ISFFPIMVNIATGLATLEPELEDVLRVLGARRLDILWKVGLPRALPYFFASLKVAITLAF 195 +FFPI + + +G+ ++ +L ++ + G + ++ LP ALP F L+ ++LA+ Sbjct: 169 GAFFPIYLGLVSGIRNVDRKLIELGEIYGLSAPALARRIVLPAALPSLFTGLRNGLSLAW 228 Query: 196 VGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAIIEKRTTGWA 255 + +E+ A+ +GIGYLL + + + A + ++ + L +E R W+ Sbjct: 229 MFLVAAELIAATKGIGYLLTDGRETSRPDVVLAAIFLLAILGKLTDGLLKWLETRKLAWS 288 Query: 256 H 256 Sbjct: 289 D 289 >gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 276 Score = 78.2 bits (191), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 89/182 (48%) Query: 74 GFAIAVGVGVTLGLVIGSSPMLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGPAILTA 133 GF A VG+ LGL+IG ++ P + +P A++P+ +++FGIG AI Sbjct: 90 GFFAAALVGIPLGLLIGRIKVIRDLLDPTLQLLRPVPVTAWLPLSMIFFGIGPNAAIFLV 149 Query: 134 FLISFFPIMVNIATGLATLEPELEDVLRVLGARRLDILWKVGLPRALPYFFASLKVAITL 193 FL +F+PI+ N G+ ++ L + +LG + +V LP A+P L++ Sbjct: 150 FLGAFYPIVFNTTFGVKAVDNRLFEAALMLGCNGSSLFRQVVLPAAMPSILNGLRLGHGF 209 Query: 194 AFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAIIEKRTTG 253 A++ V EM +G+G +++ + L AG+VVIG + + + I Sbjct: 210 AWILIVVGEMTGVPEGLGAVIMDGRMLSRTDLVIAGMVVIGIVGYSTDRILVAINNYLLK 269 Query: 254 WA 255 W+ Sbjct: 270 WS 271 >gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 276 Score = 68.6 bits (166), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 106/219 (48%), Gaps = 2/219 (0%) Query: 16 LAPWFLLIAILGVWQFICSVWEVSDFIFPSPASILQAMVEYA--GPITQHALSTFWVTMV 73 L PW + + ++ VWQ + +S I P P ++ +A E A G + H + W Sbjct: 30 LVPWIVPVLLISVWQIASQLGWLSSRILPEPFAVAKAAWELALSGELWTHVKVSLWRATT 89 Query: 74 GFAIAVGVGVTLGLVIGSSPMLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGPAILTA 133 FA+ G+G+ LGL+ G+ + +P A +P++++WFGI I Sbjct: 90 SFAVGGGLGLLLGLLTGTFKTAETLLDTTLQMIRNIPALALIPLVILWFGIEETSKIFLV 149 Query: 134 FLISFFPIMVNIATGLATLEPELEDVLRVLGARRLDILWKVGLPRALPYFFASLKVAITL 193 + FFP+ +N G+ +++ L ++ + G + V LP ALP ++ ++ L Sbjct: 150 AVGVFFPVYLNTFHGIRSVDKGLIEMAKSYGLSGWSLYRDVILPGALPSILVGVRFSLGL 209 Query: 194 AFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVV 232 +V V+E ++ GIGY+ ++A ++ + G+++ Sbjct: 210 VWVLLIVAETISAQSGIGYMTMNAREFLQTDVVLVGILL 248 >gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] Length = 309 Score = 61.6 bits (148), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 15/208 (7%) Query: 16 LAPWFLLIAILGVWQFICSVWEVSDFIFPSPASILQ-AMVEYAGP----------ITQHA 64 L P F ++ ++ VW+ I + PSP Q A +A P I + Sbjct: 60 LPPIFGMVFLILVWEIISA----KSSGIPSPLVTFQSAQALFADPFYSNGPNDQGIGWNI 115 Query: 65 LSTFWVTMVGFAIAVGVGVTLGLVIGSSPMLYAAAYPLMTAFNALPKAAFVPVLVVWFGI 124 L++ +GF +A VG+ LG +IG L P+++ + A++P+ ++ F Sbjct: 116 LASLKRVGMGFGMAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVFKA 175 Query: 125 GAGPAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRLDILWKVGLPRALPYFF 184 AI + F+ S +P+++N A G+ + + +V +VL I+ K+ P LPY Sbjct: 176 ADPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVAKVLKLSEWKIVTKILFPSVLPYML 235 Query: 185 ASLKVAITLAFVGSTVSEMNASNQGIGY 212 +++AI A++ +EM GIG+ Sbjct: 236 TGVRLAIGTAWLVIVAAEMLTGGVGIGF 263 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 562,353 Number of extensions: 21548 Number of successful extensions: 125 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 124 Number of HSP's successfully gapped: 5 Length of query: 259 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 178 Effective length of database: 921,564 Effective search space: 164038392 Effective search space used: 164038392 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)