BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4120.p (261 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 167 8e-43 gi|152979879|ref|YP_001354308.1| sulfonate/nitrate transport sys... 161 4e-41 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 161 5e-41 gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bica... 159 2e-40 gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 149 2e-37 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 167 bits (422), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 92/254 (36%), Positives = 139/254 (54%), Gaps = 12/254 (4%) Query: 4 PFVDFRHVYLAYD--GATEFAVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQANR 61 P +D + V + G T A+ +++L GEF+ ++G SGCGKST +++ G + + Sbjct: 12 PAIDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSS 71 Query: 62 GSVVINGQPVTGPLKFVGMAFQAPTLLPWRTTLENVLLPLEIVEPYRRDFKQKKAQYTER 121 GS + G P+ GP GM FQ L PW T EN+ +R KA+ E Sbjct: 72 GSANMYGMPIDGPSPERGMVFQDYGLFPWLTVKENIGFG-------QRQRNLPKAKLEEL 124 Query: 122 ALALLKTVGLDGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELW 181 + VGL +A+ +P QLSGGM+QR +I R L ++ ++LL+DEPFGALDA TRE+L Sbjct: 125 SAYYTDMVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQ 184 Query: 182 CVLRDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIVVKRDNPLPRPCDLETTYT 241 L ++W + V+ VTH + EA L+D + VM+ PGRI L RP D+ Sbjct: 185 QDLLEIWERTKVTVVFVTHAVEEAVMLSDRVVVMTAGPGRIEEDIKLDLARPRDITAVE- 243 Query: 242 DGFNALVHELREHI 255 FN + ++ +++ Sbjct: 244 --FNEIRRDITQYL 255 >gi|152979879|ref|YP_001354308.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 246 Score = 161 bits (408), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 128/230 (55%), Gaps = 14/230 (6%) Query: 23 VEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQANRGSVVINGQPVTGPLKFVGMAF 82 ++D+ L AGE +++VG SGCGKST ++L GL + G + ++G + +G+ F Sbjct: 20 LQDVSLTLAAGEIVSLVGKSGCGKSTLLRLIAGLDKHYSGEIFLDGVKLKCVTPDIGLIF 79 Query: 83 QAPTLLPWRTTLENVLLPLEIVEPYRRDFKQKKAQYTERALALLKTVGLDGYADKFPWQL 142 Q P LLPW + ENV R D + +A ALL VGL D P QL Sbjct: 80 QEPRLLPWLSVAENVGF-------NRPDQDRSRANANPHVQALLHEVGLSEAIDSLPKQL 132 Query: 143 SGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVLRDLWAERRFNVILVTHDL 202 SGGM QRA+I R L ++P++LLLDEPF A+DAFTR L +L L AE F V+LVTHD+ Sbjct: 133 SGGMAQRAAIARGLFNQPRLLLLDEPFSAVDAFTRMRLQDLLLALAAEHGFAVLLVTHDI 192 Query: 203 REAAFLADTIYVMSKRPGRIVVKRDNPLPRP-----CDLETTYTDGFNAL 247 EAA+L+D + M + G I+ LPRP DL T D L Sbjct: 193 DEAAYLSDRVLTMGQ--GEIIEDTKVNLPRPRNRHSVDLATARDDILKVL 240 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 161 bits (407), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 1 MSEPFVDFRHVYLAYDGATEF--AVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQ 58 ++ F+D +H +++ A+ +++L GEFI ++G SGCGKST + L GL Q Sbjct: 4 INSKFIDIQHAEMSFSTKKGIFNALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQ 63 Query: 59 ANRGSVVINGQPVTGPLKFVGMAFQAPTLLPWRTTLENVLLPLEIVEPYRRDFKQKKAQY 118 A G ++ + + GP + FQ +LLPW T ENV L +E V + KA+ Sbjct: 64 ATGGMLLCGNREIAGPSPERAVVFQNHSLLPWLTCYENVYLAVERV----FSATESKAEL 119 Query: 119 TERALALLKTVGLDGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTRE 178 R A L VGL K P ++SGGM+QR I RAL EPK+LL+DEPFGALDA TR Sbjct: 120 KARTRAALALVGLSHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRA 179 Query: 179 ELWCVLRDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIV 223 L L + A V++VTHD+ EA L+D I +++ P + Sbjct: 180 HLQDELLKIVAATGSTVVMVTHDVDEAVLLSDRIVMLTNGPSATI 224 >gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 433 Score = 159 bits (401), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 127/227 (55%), Gaps = 16/227 (7%) Query: 16 DGATEFAVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQANRGSVVINGQPVTGPL 75 DG +E +D GE +A++G SG GKST +++ GL A+ GS + G+ + GP+ Sbjct: 20 DGTPSSVLEQVDFTLTEGEIVALLGKSGSGKSTLLRIMAGLIPADSGSAMYRGKNIYGPV 79 Query: 76 KFVGMAFQAPTLLPWRTTLENVLLPLEI--VEPYRRDFKQKKAQYTERALALLKTVGLDG 133 + M FQ+ L PW T +NV L LE V P R+ +RA A+L +GL G Sbjct: 80 AGIAMVFQSFALFPWLTVQQNVELGLEAQGVPPAERE---------KRADAMLDLIGLAG 130 Query: 134 YADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVLRDLWAERRF 193 + P +LSGGM+QR I R L+ P +LL+DE F ALD T E L + ++W E R Sbjct: 131 FGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWEENRI 190 Query: 194 ---NVILVTHDLREAAFLADTIYVMSKRPGRI--VVKRDNPLPRPCD 235 +++V+H++ EA ++D I V+S PGRI +K D P PR D Sbjct: 191 PTKGILIVSHNIEEAVMMSDRIVVLSSSPGRIRSEIKIDLPRPRNPD 237 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 149 bits (376), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 124/229 (54%), Gaps = 8/229 (3%) Query: 5 FVDFRHVYLAYDGATEFAVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQANRGSV 64 ++F + + GA+ ++D+ L AGEF+AIVG SG GKST ++ A GL + G V Sbjct: 4 IIEFDRIAYLHPGASAPVIQDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSSGDV 63 Query: 65 VINGQPVTGPLKFVGMAFQAPTLLPWRTTLENVLLPLEIVEPYRRDFKQKKAQYTERALA 124 + + G + + FQ LLPWRT +NV LE + D +Q + + Sbjct: 64 QLKLPQLPGRRRR-AVVFQDGRLLPWRTVADNVAYGLETLG-ISADEQQSRIKQA----- 116 Query: 125 LLKTVGLDGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVL 184 L+ GL + +++P QLSGG QR I RAL +P +LL+DEPF A+DA TR L L Sbjct: 117 -LQLTGLAEFGERWPHQLSGGQVQRVGIARALAVQPDLLLMDEPFSAVDALTRRNLQAEL 175 Query: 185 RDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIVVKRDNPLPRP 233 +W + V+ VTHD+ EA FLAD + V+ P +V LPRP Sbjct: 176 IRIWQATQSAVMFVTHDIDEAVFLADRVIVLGGSPATVVENLRIDLPRP 224 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 623,654 Number of extensions: 25645 Number of successful extensions: 233 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 161 Number of HSP's successfully gapped: 60 Length of query: 261 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 180 Effective length of database: 921,564 Effective search space: 165881520 Effective search space used: 165881520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)