BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4118.p
         (274 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982134|ref|YP_001351918.1| hypothetical protein mma_0228 [...   144   5e-36

>gi|152982134|ref|YP_001351918.1| hypothetical protein mma_0228
           [Janthinobacterium sp. Marseille]
          Length = 308

 Score =  144 bits (363), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/295 (34%), Positives = 149/295 (50%), Gaps = 49/295 (16%)

Query: 22  SMSAHALDWADNSIGYRYGTR---FAEPFNSQ--DISKNIINFQHASGYQYGTNFLNIDM 76
           ++ A+A DW+D SI YRY  +   F+   N+Q  D++K+II   H SGY+YG+NF +++ 
Sbjct: 21  ALPAYAADWSDTSISYRYLPQESGFSLDSNNQPLDVAKSIIQLTHVSGYKYGSNFFDVNF 80

Query: 77  LLSDH---KDDN-------------AREFYVVYRNTLDIGKISGKDLSFGPARGVGLTLG 120
           + SD+    DD              A E + +YR+ L +G +SG+DL FGP + + LT G
Sbjct: 81  IKSDNNNPADDGTLPFGPAPGTGSGAVEVFGMYRHNLSLGAVSGRDLKFGPVKDISLTAG 140

Query: 121 FDWNTKNDNSYASKKRMWVVGPTLMMDVP-GFLNVSVLALFES-NKPIGVT--------- 169
           F+ +TKND + A+  R   +GPT    +P GF NV +LA  ES N   G+T         
Sbjct: 141 FNLSTKNDFNGAA-TRAVALGPTFHFALPAGFFNVGLLAYKESNNTAFGITDASGKVLSP 199

Query: 170 -GRYTYDTHPMLNLSWGIPL-GGSGWAFEGYMNYIASKGKNEFGGPTSPEVNFDGELMYD 227
            GR +YD    L  +W +P   G     +G++     KG       T  E   D  +M+D
Sbjct: 200 PGRVSYDWTAQLAAAWSVPFHAGIPAKLQGFLAVTGPKGM-----LTKTETLLDTTVMFD 254

Query: 228 LGTTMGMTKNKLRVGLEYQYWRNKFGNPNTVPG--------SLAKTPMVRAEYHF 274
           +G+  G  K+    G+ Y+YW NKFG      G            TP+V+ E HF
Sbjct: 255 IGSLAG-KKDTFYAGIGYRYWNNKFGTDEGAAGYQGLVNKAGHVSTPIVQLEAHF 308


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 678,465
Number of extensions: 29382
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 192
Effective length of database: 917,867
Effective search space: 176230464
Effective search space used: 176230464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)