BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4117.p
         (408 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981072|ref|YP_001352204.1| hypothetical protein mma_0514 [...   454   e-129

>gi|152981072|ref|YP_001352204.1| hypothetical protein mma_0514
           [Janthinobacterium sp. Marseille]
          Length = 411

 Score =  454 bits (1168), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/408 (54%), Positives = 295/408 (72%), Gaps = 9/408 (2%)

Query: 3   AYLLDWLNLLLRWLHVITAIAWIGSSFYFVWLDNSLVAPA-DAELKEKGVGGELWAVHGG 61
           +Y ++WLNLL+RWLH+IT IAWIG+SFYFVWLDNS+  P   +EL EKGV GELWAVHGG
Sbjct: 7   SYGVEWLNLLVRWLHLITGIAWIGASFYFVWLDNSIRPPKPGSELAEKGVSGELWAVHGG 66

Query: 62  GFYNPQKYLLAPKVLPEHLHWFYWESYSTWLSGFALFSLLYLFNASVFLVDPNVFEMSAS 121
           GFYNPQKYL+APK LP  LHWF WE+Y+TWLSGFA+  ++Y FNAS  ++D +V ++S+ 
Sbjct: 67  GFYNPQKYLVAPKELPPELHWFKWEAYATWLSGFAMLFIVYYFNASAMMIDKSVADLSSW 126

Query: 122 MAGGTAIAFLVFNWLIYDAIC-STIGDRPGADRLVNLLVGLQVVVSVWAACHLFSGRAAF 180
            A G  +  LV  W++YD +C S +G R G   L+ +++ + +V + +A  HL SGRAA+
Sbjct: 127 EAIGVGLGTLVVGWIVYDLLCRSPLGKREG---LLGMIMFVFIVAATYALTHLLSGRAAY 183

Query: 181 LISGASLATIMSANVLVWIIPGQRKMVASMRAGQVPDPIHGKRGKQRSVHNTYFTLPVLF 240
           +  GA + T+M  NVL+ IIPGQRK+V +M+ G+ PDP++GKR KQRSVHN YFTLPVLF
Sbjct: 184 IHVGAMIGTMMVGNVLMVIIPGQRKLVEAMKVGKSPDPVYGKRAKQRSVHNNYFTLPVLF 243

Query: 241 AMLSNHYSMTYSAPHNWLVLLCIMAAGALIRQFFVLRHKGVYNWWYPGIAVGLLLAVIVW 300
            M+SNHY+MTY+  ++WLVL  IMAAG LIR FF LRH G  +  YP   V LL+AV + 
Sbjct: 244 IMISNHYAMTYTHAYSWLVLAAIMAAGVLIRHFFNLRHAGKVSVAYPIAGVALLVAVAIA 303

Query: 301 MSPAMQAKPVAASAASSAPVAEAGGAFAQVQQVIQARCIQCHSPQPT---LMPVPGKGVL 357
           ++P    KPVA +A  +   + +   FA+VQ+VI  RC+ CH+ QPT       P  G++
Sbjct: 304 IAPRPLPKPVATTAPGADTASISAADFAKVQEVITQRCVSCHAAQPTHEGFATAPA-GMM 362

Query: 358 LDSPEHISQHAQQIYQQAVVQKSMPLGNLTHITDDERAVIGKWFESGA 405
           L +PE I QHA ++YQ+ V  K MPLGNLTH+TD+ER ++G WFE+GA
Sbjct: 363 LQTPELIRQHAARVYQRTVQTKDMPLGNLTHMTDEERKLVGAWFEAGA 410


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 928,857
Number of extensions: 35944
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 323
Effective length of database: 906,776
Effective search space: 292888648
Effective search space used: 292888648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)