BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4116.p
         (310 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981727|ref|YP_001352207.1| polysaccharide deacetylase fami...   478   e-136
gi|152981993|ref|YP_001355356.1| hypothetical protein mma_3666 [...   115   5e-27

>gi|152981727|ref|YP_001352207.1| polysaccharide deacetylase family
           protein [Janthinobacterium sp. Marseille]
          Length = 316

 Score =  478 bits (1231), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 222/317 (70%), Positives = 259/317 (81%), Gaps = 9/317 (2%)

Query: 1   MSQQSTYPRDLAGYGRNPPHARWPGQARVALQFVLNYEEGGENCVLHGDAASEQFLSEIV 60
           MS+Q+ YPR++ GYGR PPHA+WPG+AR+ALQFVLNYEEG ENCVL GDA SE FLSEI+
Sbjct: 1   MSKQN-YPRNMTGYGRTPPHAQWPGRARIALQFVLNYEEGAENCVLDGDAGSETFLSEII 59

Query: 61  GAAAYPARHMSMESIYEYGSRVGVWRILREFEKRGLPMTVFGIAMALQRSPDVTQAFLDL 120
           GA ++PARHMSMESIYEYGSR G+WR+LR FE+R LP+T+FG+A ALQR+PD   AF +L
Sbjct: 60  GAQSFPARHMSMESIYEYGSRAGLWRLLRIFEERKLPLTIFGVARALQRNPDAVAAFTEL 119

Query: 121 GHEIACHGLRWIHYQNIDIETERAHMREAVQIFRELTGSAPLGWYTGRDSPNTRQLVVEH 180
           GHEIACHGLRWI YQN+D  TER HM EAV I RELTG+APLGWYTGRDSPNTR+LV+EH
Sbjct: 120 GHEIACHGLRWISYQNMDEATERKHMAEAVSIIRELTGTAPLGWYTGRDSPNTRRLVMEH 179

Query: 181 GGFAYDSDYYGDDLPFWTEV----ETGDGVKAPHLVVPYTLDSNDMRFATPQGFNTSEHF 236
           GGFAYD+D Y DDLP+W  V      G  V AP L+VPYTLDSNDMRFA  QGFN+   F
Sbjct: 180 GGFAYDADSYADDLPYWEPVAHRDANGKQVTAPQLIVPYTLDSNDMRFAALQGFNSGTQF 239

Query: 237 YQYLKDSFDVLYEEGE----EAPKMLSIGMHCRLLGRPGRFRALQRFLDYVQSHDKVWIC 292
           + YLKD+FDVLY EG+      PKMLS+G+HCRL+GRPGR  AL RFLDYVQ+H++VWI 
Sbjct: 240 FDYLKDAFDVLYREGDPQGLNQPKMLSVGLHCRLIGRPGRAAALARFLDYVQNHEQVWIT 299

Query: 293 RRIDIAEHWKKTHPFAE 309
           RRIDIA HW+  HPF+ 
Sbjct: 300 RRIDIANHWRAKHPFSN 316


>gi|152981993|ref|YP_001355356.1| hypothetical protein mma_3666
           [Janthinobacterium sp. Marseille]
          Length = 294

 Score =  115 bits (287), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 134/282 (47%), Gaps = 18/282 (6%)

Query: 24  PGQARVALQFVLNYEEGGENCVLHGDAASEQFLSEIVGAAAYPARHMSMESIYEYGSRVG 83
           PG ARVA+  ++N E       L  +A     L   +G A  P   +     +EYG RVG
Sbjct: 27  PGNARVAVWTIVNLENW-----LPENAMPRTVLPPPMGQALLP--DVPNWCWHEYGMRVG 79

Query: 84  VWRILREFEKRGLPMTVFGIAMALQRSPDVTQAFLDLGHEIACHGLRWIHYQNIDIETER 143
            WRIL+  ++R +  T+              +A L  G E   HGL  +      +E + 
Sbjct: 80  YWRILQTLQERNIKATLALNGSVCTEYAAACEAALKAGWEFMGHGL--VQKPMHRVEDQL 137

Query: 144 AHMREAVQIFRELTGSAPLGWYTG--RDSPNTRQLVVEHGGFAYDSDYYGDDLPFWTEVE 201
           A +R+ ++  R+ TG AP GW +    ++  T  L+ E  G  Y +D+  DD P      
Sbjct: 138 AEIRQTMEAIRQFTGKAPRGWESPGLTETAETADLLAE-AGIEYVADWVLDDQPVPIRTR 196

Query: 202 TGDGVKAPHLVVPYTLDSNDMRFATPQGFNTSEHFYQYLKDSFDVLYEEGEEAPKMLSIG 261
           +G  V      VPYT++ ND+  +  Q    S+   +  +D FD LY+EG   P++++I 
Sbjct: 197 SGSLVS-----VPYTVEINDVVMSAIQQ-QPSDEILRRGRDQFDQLYKEGATIPRVMAIS 250

Query: 262 MHCRLLGRPGRFRALQRFLDYVQSHDKVWICRRIDIAEHWKK 303
           +H  L G P R R L    D+++SHD V +C   +I + +K 
Sbjct: 251 VHPYLTGAPHRIRYLAELYDHIRSHDGVLMCTGEEILDIYKN 292


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.138    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 800,733
Number of extensions: 33942
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 310
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 227
Effective length of database: 914,170
Effective search space: 207516590
Effective search space used: 207516590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)