BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4113.p (246 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982693|ref|YP_001351727.1| GntR family transcriptional reg... 107 7e-25 gi|152982557|ref|YP_001351913.1| GntR family transcriptional reg... 91 6e-20 gi|152982451|ref|YP_001355369.1| GntR family transcriptional reg... 78 6e-16 gi|152981662|ref|YP_001352127.1| GntR family transcriptional reg... 66 2e-12 >gi|152982693|ref|YP_001351727.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 284 Score = 107 bits (267), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 1/191 (0%) Query: 36 IYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLSRLASEGMVDLEANRGAFIASPSH 95 I ++I+ +L P T+L EQ L ++ +R +R+ L RLA+ G+V + A RG F+ P+ Sbjct: 17 ITESILAKQLAPGTRLGEQQLADLFGVSRTLIREALMRLATRGIVMVSARRGWFVIEPTA 76 Query: 96 AEVRDMFELRNILEHAVLEKVGRQAGTRQIAGLRRMVEEERDCYLNGDRPRWIRLSAQFH 155 +E R+ FE R ++E +L R I LR + E+ D L FH Sbjct: 77 SEAREAFEARRVIELGLLRH-ARPLSKHAIGQLREHIAREQAAIAGDDVGARSYLLGDFH 135 Query: 156 LALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEHETVLEALEKGDIEAAQE 215 + L E GN LL +TLR L +RTTL ++ S ++H ++ ALE GDI+ A+ Sbjct: 136 VCLCECLGNNLLSDTLRDLTARTTLTAMLRQSSSQAVDSCEDHVHIVAALESGDIDEAER 195 Query: 216 HMAHHLHLCED 226 M HL + E Sbjct: 196 LMLEHLQVVES 206 >gi|152982557|ref|YP_001351913.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 236 Score = 90.9 bits (224), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 98/191 (51%) Query: 30 ERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLSRLASEGMVDLEANRGAF 89 +R+ + +A++ RL P TKL E + I+ R +R+ L RL+ + +V +E NRGA Sbjct: 11 QRIVDAVTEAVLAQRLVPGTKLNEAEMADIFGVGRTVIRQALIRLSQDKLVTIEHNRGAH 70 Query: 90 IASPSHAEVRDMFELRNILEHAVLEKVGRQAGTRQIAGLRRMVEEERDCYLNGDRPRWIR 149 I S E+R+ FE+ +LE A LEK + IA LR+ + + + + D + R Sbjct: 71 ITELSDLEIRETFEVLAMLECAALEKFIKTITAFDIAKLRQHIAHQSGAHQHHDIDQEFR 130 Query: 150 LSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEHETVLEALEKGD 209 L FH+ + L N +L + KL ++ L+ ++ + +H +++ +E GD Sbjct: 131 LGPDFHVLIVGLAHNRVLEDIHGKLTAQERLITSQYYGEFDHVHLCQDHSQLIDLIESGD 190 Query: 210 IEAAQEHMAHH 220 + AQ+ + H Sbjct: 191 LARAQQLLIGH 201 >gi|152982451|ref|YP_001355369.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 220 Score = 77.8 bits (190), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 4/216 (1%) Query: 30 ERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLSRLASEGMVDLEANRGAF 89 + + Q I AI E RLPP TKL E+ L +I+ +R +R+ L RL+ E ++ + R + Sbjct: 4 QTIVQTISGAIYERRLPPGTKLNERELAEIFGVSRTVIRQALIRLSQEELITISPKRASQ 63 Query: 90 IASPSHAEVRDMFELRNILEHAVLEKVGRQAGTRQIAGLRRMVEEERDCYLNGDRPRWIR 149 +A PS E D++++ +++E V++ + + QIA LR +E + D + Sbjct: 64 VAHPSFQEAFDLYQILHVVESGVVDILMQTITPEQIAMLREHTAKEHAAFKAEDHDLADK 123 Query: 150 LSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSF-DEHETVLEALEKG 208 L FH L N L +L + L+ A + + C EH ++++LE Sbjct: 124 LGRGFHTLLISCLANEPLNNMHARLRRKEALITALYKV-DFDYCHLRGEHIALVDSLETR 182 Query: 209 DIEAAQEHMAHHLHLCED--RVRPDADDQFDLRAVL 242 D A++ +A H +L R + DLRA L Sbjct: 183 DSFRAKQLLASHNNLVIKGYRFEIGSAPDIDLRAAL 218 >gi|152981662|ref|YP_001352127.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 251 Score = 65.9 bits (159), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 9/210 (4%) Query: 34 QDIYDAIMEHR--------LPPRTKLTEQTLCQIYDTARHTVRKVLSRLASEGMVDLEAN 85 Q ++DA++EH L P KL E+ +C+ +R +R+ + LASEG++D+ N Sbjct: 23 QRLHDAVVEHLQRLIIEGVLTPGMKLNEREVCERLGISRTPLREAMKVLASEGLIDIVPN 82 Query: 86 RGAFIASPSHAEVRDMFELRNILEHAVLEKVGRQAGTRQIAGLRRMVEEERDCYLNGDRP 145 RGAF++ + E+ + FE+ + LE E + +IA ++ + + C D P Sbjct: 83 RGAFVSKMNDTEIWEAFEMMSGLEALSGELAAERISPAEIADIKVLHQAMLVCRAQNDLP 142 Query: 146 RWIRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNAC-SFDEHETVLEA 204 + + H + E N++L + + R + K+ + +EH+ +++A Sbjct: 143 GYYSRNQTIHNKINEAARNSMLRQIYLSVNRRLLALRFKSNFKEEKWDRAINEHDEMIQA 202 Query: 205 LEKGDIEAAQEHMAHHLHLCEDRVRPDADD 234 LE D + + HL D V D D Sbjct: 203 LEARDGKRLAGILRQHLLDKRDSVMADLRD 232 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.132 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 492,114 Number of extensions: 17541 Number of successful extensions: 71 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 68 Number of HSP's successfully gapped: 5 Length of query: 246 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 165 Effective length of database: 921,564 Effective search space: 152058060 Effective search space used: 152058060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)