BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4110.p (273 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983296|ref|YP_001354496.1| AraC family transcriptional reg... 83 2e-17 gi|152982464|ref|YP_001352733.1| AraC family transcriptional reg... 79 3e-16 gi|152982298|ref|YP_001354777.1| AraC family transcriptional reg... 75 5e-15 gi|152982501|ref|YP_001354050.1| AraC family transcriptional reg... 72 5e-14 gi|152982421|ref|YP_001354091.1| AraC family transcriptional reg... 71 9e-14 >gi|152983296|ref|YP_001354496.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 281 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 69/109 (63%), Gaps = 1/109 (0%) Query: 147 GYADLRAITRAKSWINEQPAHAWTLAELAREADLSRFQFIRHFDRATGLTPHAYIVQRRI 206 G AD+R + R+ ++ P HAW++AELA E+++SR + HF R G TP Y++ R+ Sbjct: 167 GLADMR-LARSLLQMHNSPEHAWSIAELASESNMSRAAYAVHFKRVIGQTPADYLLSWRV 225 Query: 207 HLARQMIRQGCSLRDVAASCGFADQSHMTRQFVRSFGLSPGAYARAVSG 255 LA++++R+G S+ +AA G+ S ++R F R GLSP + + ++G Sbjct: 226 SLAQKLMREGRSITLIAAQVGYESPSALSRAFRRKTGLSPRDWLKDLAG 274 >gi|152982464|ref|YP_001352733.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 240 Score = 79.0 bits (193), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 69/247 (27%), Positives = 106/247 (42%), Gaps = 46/247 (18%) Query: 7 DTDHHFGKHTHEQFGVGLILRGAQKSASQCGVVEATAGDIITVNPEEVHDGTP-LGEGGR 65 D+ G H H++ + L+L G++K V+ AG + + H P L G R Sbjct: 26 DSAPALGSHFHDEGQLTLVLAGSRKFEVNNKVIRLDAGQCLYIPAGMPHCSLPHLAAGTR 85 Query: 66 AWQMLYLDVAVVQATVADLNETGPRTCMEFPQPRRRDPALTRIFRHHVQAVTRSSSDWTL 125 + Y P R P + I + + QA+ + Sbjct: 86 CLNIYYQ-----------------------PAHARHQPVVLDIRQLNAQALD-------V 115 Query: 126 PGDESLLLLLQ---ALLRPACPKPGYADLRAITRAKSWINEQPAHAWTLAELAREADLSR 182 P +LLL ++ AL+R G + + E ++A +A + LSR Sbjct: 116 P---ALLLQIEEELALMRAGIQAAG---------STVCLQEFRNSLESIAVIASASGLSR 163 Query: 183 FQFIRHFDRATGLTPHAYIVQRRIHLARQMIRQGCSLRDVAASCGFADQSHMTRQFVRSF 242 F R F R G++PHAY + R++ AR+ +R G ++ D A GFADQSH R F R F Sbjct: 164 EAFSRKFTRDIGMSPHAYRLVGRLNAARRQLRDGVAVADTATDFGFADQSHFGRHFFRVF 223 Query: 243 GLSPGAY 249 G++PGAY Sbjct: 224 GVTPGAY 230 >gi|152982298|ref|YP_001354777.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 310 Score = 74.7 bits (182), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 1/106 (0%) Query: 147 GYADLRAITRAKSWINEQPAHAWTLAELAREADLSRFQFIRHFDRATGLTPHAYIVQRRI 206 G AD+R + A I+E P WT+A LA+ + LSR F F A G+TP Y++ R+ Sbjct: 192 GLADIR-LANAIRCIHESPEQPWTVALLAKASALSRSTFFERFSAALGVTPMDYLLSWRM 250 Query: 207 HLARQMIRQGCSLRDVAASCGFADQSHMTRQFVRSFGLSPGAYARA 252 LAR + + ++ +VAA G++ S T F R G+ PG Y+++ Sbjct: 251 ALARNFLERKKTIAEVAALVGYSSSSTFTVAFTRHTGMPPGQYSKS 296 >gi|152982501|ref|YP_001354050.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 338 Score = 71.6 bits (174), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 1/104 (0%) Query: 154 ITRAKSWINEQPAHAWTLAELAREADLSRFQFIRHFDRATGLTPHAYIVQRRIHLARQMI 213 + R ++ A+ +A+LA LSR F F TP+ Y+ RI+ A+Q++ Sbjct: 229 MKRVNDYLQANLHGAFQIADLAASIGLSRTVFFERFVHTMKYTPNQYLQILRINRAKQLL 288 Query: 214 R-QGCSLRDVAASCGFADQSHMTRQFVRSFGLSPGAYARAVSGA 256 R + SL DVA +CG+ADQSH++R F R G+SPG Y GA Sbjct: 289 RDRKLSLVDVAFACGYADQSHLSRFFKRFVGVSPGKYRGDFIGA 332 >gi|152982421|ref|YP_001354091.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 330 Score = 70.9 bits (172), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 1/99 (1%) Query: 154 ITRAKSWINEQPAHAWTLAELAREADLSRFQFIRHFDRATGLTPHAYIVQRRIHLARQMI 213 + R ++ ++ +A+LA LSR F F T TP+ Y+ RI+ A+Q++ Sbjct: 229 MQRVNDYLQANLDGSFQVADLAAVIGLSRTIFFERFTVTTKATPNQYLQVLRINRAKQLL 288 Query: 214 RQG-CSLRDVAASCGFADQSHMTRQFVRSFGLSPGAYAR 251 R G SL D+A +CG+ADQSH+ R F R G++PG Y + Sbjct: 289 RDGKLSLVDIAFACGYADQSHLARFFKRFVGVAPGRYRK 327 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.135 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 633,672 Number of extensions: 24056 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 9 Length of query: 273 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 191 Effective length of database: 917,867 Effective search space: 175312597 Effective search space used: 175312597 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)