BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4109.p
         (203 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981789|ref|YP_001352259.1| homoserine/homoserine lactone e...    82   2e-17

>gi|152981789|ref|YP_001352259.1| homoserine/homoserine lactone
           efflux protein [Janthinobacterium sp. Marseille]
          Length = 214

 Score = 82.0 bits (201), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 9/205 (4%)

Query: 5   FLITSLIVVASPGTGALVTLNAGLSHGTRAAMVAATGCTLGIIPHMLLAITGLATVLHSS 64
           FLI ++++  +PG+GA+++++ GLS+G R    +  G  LG+I  + +A  G+ ++L +S
Sbjct: 9   FLIAAILIAITPGSGAILSMSHGLSYGVRKTTASILGLQLGLIFLLTVAGAGVGSLLLAS 68

Query: 65  PFCFELIQYAGVLYLLRMAWLVMKEKNLLSVE-RVQRPQTYYEIIQ----NAVLVNFLNP 119
              F +++  G  YL+ +     + K +L+ E + Q  +T     +    + +L N  NP
Sbjct: 69  EMAFNIVKTIGAFYLIYLGLSQWRAKVVLAPEMQAQHARTIVPTFKKRFLHGLLTNVTNP 128

Query: 120 KLSIFFLAFLPQFIRSDDISPMW-SMLSMSLVFMAMTLAIFALYGWFAAAVRDRVLRSHR 178
           K  IF +A LPQFI  D  +P+   +L + +    + + +   Y  FAA+   R  R   
Sbjct: 129 KGVIFMVAVLPQFIVKD--APLLPQLLILGVTICVIDIIVMHAYA-FAASSMQRFFRDAT 185

Query: 179 AMLWLRRTFAAAFVVLGVRLALAQR 203
           A+    R F + F+ +G  L   +R
Sbjct: 186 AVKKQNRFFGSLFIAIGTGLFFVKR 210


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.332    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 432,919
Number of extensions: 15761
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 124
Effective length of database: 928,958
Effective search space: 115190792
Effective search space used: 115190792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 127 (53.5 bits)