BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4107.p (244 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 421 e-119 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 228 3e-61 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 162 2e-41 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 160 6e-41 gi|152980731|ref|YP_001354730.1| phosphonate ABC-type transport ... 137 5e-34 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 421 bits (1081), Expect = e-119, Method: Compositional matrix adjust. Identities = 201/241 (83%), Positives = 221/241 (91%) Query: 1 MPLIAIDNVKKRFGDNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNI 60 MPLIAIDNVKK +G N+VLKGI +DVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEG+I Sbjct: 1 MPLIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSI 60 Query: 61 SVAGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGTSEAEAMATAK 120 SVAG+ LG SELELRNLRLKVGMIFQQFNLFPHLSVGRN+MI+PMIVKG SE +A A A Sbjct: 61 SVAGSHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARALAM 120 Query: 121 ANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTV 180 NLEKVGL KFD++PDQLSGGQQQRVAIARALSM PQALLCDE+TSALDPELVNEVL V Sbjct: 121 KNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLNV 180 Query: 181 MRGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIGM 240 +RGLA EGMTL+MVTHEMRFAREVC+R+VFMHQGKVHEIG PE++F NP TPEL+QF+G+ Sbjct: 181 VRGLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELKQFLGL 240 Query: 241 T 241 Sbjct: 241 A 241 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 228 bits (581), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 114/237 (48%), Positives = 159/237 (67%) Query: 3 LIAIDNVKKRFGDNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 +I +D V K +G+ +VL V G+V+ + G SGSGKSTL++ +NGLE +G I+V Sbjct: 1 MIELDKVSKWYGNFQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQGKITV 60 Query: 63 AGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGTSEAEAMATAKAN 122 G +G + L +LR ++GM+FQ F LFPHLS+ N+ +A + V S +A Sbjct: 61 DGISVGDPKTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLPDATERGLKY 120 Query: 123 LEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVMR 182 L++VGL D +P QLSGGQQQRVAIARALSM P A+L DE TSALDPE++NEVL VM Sbjct: 121 LDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 183 GLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 GLA+EGMT+++VTHEM FA++V NR++FM +G + E +E FG ++ + F+ Sbjct: 181 GLAQEGMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKDEFFGTTRSDRARDFLA 237 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 162 bits (410), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 138/240 (57%), Gaps = 6/240 (2%) Query: 1 MPLIAIDNVKKRFGDNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNI 60 M L+ I N+ +RFGDN V+ I+L +E GE ++G SG GK+TLLR I G + D G I Sbjct: 1 MALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQI 60 Query: 61 SVAGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGTSEAEAMATAK 120 + G L E R +R +FQ + LFPH++VG N+ P+ + T +AE Sbjct: 61 LLDGVDLTGVPPEQRPVR----TVFQNYALFPHMTVGGNIAF-PLEMANTPKAEIQKKVD 115 Query: 121 ANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTV 180 LE V L YP +LSGGQ+QRV+IARAL P+ LL DE SALD +L ++ Sbjct: 116 EALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIE 175 Query: 181 MRGLAKE-GMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 + L KE G+T + VTH+ A + +R+ M++G+V ++ P ++ P++ + FIG Sbjct: 176 LINLQKEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFIG 235 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 160 bits (405), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 142/241 (58%), Gaps = 10/241 (4%) Query: 4 IAIDNVKKRFGDNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISVA 63 I + N++K+FG+ L ++LD GE+ A++G SG GK+TLLR I GLE D G + + Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 64 GAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVM----IAPMIVKGTSEAEAMATA 119 G A + R +VG +FQ + LF H++V N+ + P + SE++ Sbjct: 63 GEDASARHVRER----QVGFVFQHYALFKHMTVFENIAFGLRVRPAATR-PSESQIKEKV 117 Query: 120 KANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLT 179 LE V L D YP QLSGGQ+QR+A+ARAL++ P+ LL DE ALD ++ E+ Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 180 VMRGLAKE-GMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFI 238 +R L + +T + VTH+ A EV +++V M++G V +IG P++++ NP +P + F+ Sbjct: 178 WLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFL 237 Query: 239 G 239 G Sbjct: 238 G 238 >gi|152980731|ref|YP_001354730.1| phosphonate ABC-type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 262 Score = 137 bits (346), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 131/234 (55%), Gaps = 9/234 (3%) Query: 3 LIAIDNVKKRFGDNEVLKGINLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 +I +++V R+GD L+ +L + G+ ++G SG+GKSTLLRCIN + G I V Sbjct: 1 MIQLNDVSVRYGDTYALRSTSLKLHKGQFTVLLGASGAGKSTLLRCINMMCQPSAGTIDV 60 Query: 63 AGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGT-------SEAEA 115 G L + L+ R + GM+FQQ L + +NV++ + T S+ E Sbjct: 61 VGLGLLQNRRVLQAHRRQTGMVFQQHQLIARRTALQNVLMGRLGYHTTLRSLFPLSQEEQ 120 Query: 116 MATAKANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVN 175 +A L++VGL HK DQLSGGQQQRV IARAL+ P+ +L DE ++LDP Sbjct: 121 RIGLRA-LDRVGLLHKALTRVDQLSGGQQQRVGIARALTQQPKLILADEPVASLDPATSE 179 Query: 176 EVLTVMRGLAKE-GMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGN 228 +VL ++R + KE G++ ++ H++ A + +R+V + GKV P +L N Sbjct: 180 KVLEILRQICKEDGISAVVSLHQVDLALKYSDRIVGLAHGKVMFDAVPTDLNEN 233 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 544,246 Number of extensions: 21091 Number of successful extensions: 282 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 64 Length of query: 244 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 163 Effective length of database: 921,564 Effective search space: 150214932 Effective search space used: 150214932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)