BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4106.p (218 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 335 9e-94 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 95 4e-21 gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 78 4e-16 gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 66 2e-12 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 335 bits (860), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 170/218 (77%), Positives = 194/218 (88%) Query: 1 MISFTTWDIVRNLMLAWRWTILLSLVTFLLGGTLGLVILFMRTSRQNWIRQIARLYIELF 60 MISF+ WDI+RNL+LA RWT++LSLVTFLLGG LGL+ILF RTS+ +R +AR+YIE+F Sbjct: 1 MISFSLWDILRNLLLAGRWTVVLSLVTFLLGGMLGLLILFFRTSKSGALRNVARIYIEIF 60 Query: 61 QGTPLLMQLFLVFFGIALFGIEVPAWLAAGLALTCWAASYLAEIWRGCVEAIPKGQWEAS 120 QGTPLLMQLFLVFFGIALFGIEVPAWLAAGL LT W+AS+LAEIWRGCVEAIP+GQWEAS Sbjct: 61 QGTPLLMQLFLVFFGIALFGIEVPAWLAAGLTLTLWSASFLAEIWRGCVEAIPRGQWEAS 120 Query: 121 SVLAMGYFQQMRYIVLPQAFRIAIAPTVGFGVQIIKSTAVTSIIGFIELSKAGTVITNAT 180 SVLAM Y QQMRY++LPQA RIA+ PT+GF VQIIK TAVTSIIGF+ELSKA TVITNAT Sbjct: 121 SVLAMNYVQQMRYVILPQALRIALPPTIGFSVQIIKGTAVTSIIGFVELSKAATVITNAT 180 Query: 181 FRPFTVFAIVGALYFVLCWPLSKYSQSLERKYNAAHRH 218 F PFTV+A G YF+LCWPLS+YSQ LERK++AAH H Sbjct: 181 FMPFTVYAAAGLFYFILCWPLSRYSQFLERKFHAAHSH 218 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 94.7 bits (234), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 18/229 (7%) Query: 6 TWDIVRNLMLAWRWTILLSLVTFLLGGTLGLVILFMRTSRQNWIRQIARLYIELFQGTPL 65 TW + +L+ WT+ ++L ++ +G ++ RTS + W+ ++ Y+ELF+ PL Sbjct: 16 TW--LESLLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLGGAYVELFRNIPL 73 Query: 66 LMQLFLVFFGIALFGIEVPAWL-----------AAGLALTCWAASYLAEIWRGCVEAIPK 114 L+Q F+ +F + V AW+ A + L + +S +AE R ++A+P+ Sbjct: 74 LVQFFVWYFVVPGLVPAVKAWVITLDPTEHQFVTAVVCLGFFTSSRIAEQVRSGIQALPR 133 Query: 115 GQWEASSVLAMGYFQQMRYIVLPQAFRIAIAPTVGFGVQIIKSTAVTSIIGFIELSKAGT 174 GQ A L + Q RY++LP A+RI I P + +IK+TAV IG +EL Sbjct: 134 GQRNAGYALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTR 193 Query: 175 VITNATFRPFTVFAIVGALYFVLCWPLSKYSQSLERK-----YNAAHRH 218 + TFR F F +Y V+ ++ +ER+ Y A +H Sbjct: 194 EMGEMTFRYFEAFGAATLIYVVIAMTANRLMALVERRLAVPGYIAGGKH 242 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 78.2 bits (191), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 9/209 (4%) Query: 13 LMLAWRWTILLSLVTFLLGGTLGLVILFMRTSRQNWIRQIARLYIELFQGTPLLMQLFLV 72 L+ ++T+ L++V G G ++ R S + IA Y+ L + PLL+ +F Sbjct: 16 LLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSLIAAAYVNLMRSIPLLLVIFWF 75 Query: 73 FFGIALF-----GIEVPAWLAAG----LALTCWAASYLAEIWRGCVEAIPKGQWEASSVL 123 +F + + G E P L A + + A+Y EI R +++I KGQ A L Sbjct: 76 YFLMPIVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSISKGQVNAGYAL 135 Query: 124 AMGYFQQMRYIVLPQAFRIAIAPTVGFGVQIIKSTAVTSIIGFIELSKAGTVITNATFRP 183 + Y Q M+ +VLPQAFR + + + + + ++ S++ + A + R Sbjct: 136 GLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGAAVKVAQRDSRV 195 Query: 184 FTVFAIVGALYFVLCWPLSKYSQSLERKY 212 ++ V +YFVL + LS + L++++ Sbjct: 196 VEMYLFVAIVYFVLSFALSTLVKQLQKRF 224 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/149 (36%), Positives = 78/149 (52%), Gaps = 2/149 (1%) Query: 42 RTSRQNWIRQIARLYIELFQGTPLLMQLFLVFFGIALFGIEVPAWLAAGLALTCWAASYL 101 RT W+R + Y+EL + TP L+QLF +FFG+ G+++ AA LA+ +Y Sbjct: 46 RTQEPRWLRPVVSAYVELIRNTPFLIQLFFIFFGLPSIGVQITEMQAAILAMVINLGAYS 105 Query: 102 AEIWRGCVEAIPKGQWEASSVLAMGYFQQMRYIVLPQAFRIAIAPTVGFGVQIIK-STAV 160 EI R V A+ +GQ EA+ L+M Q R+I+L A + I P + + I+ +AV Sbjct: 106 TEIIRAGVVAVARGQIEAALSLSMTRVQIFRHIILRPALQ-KIWPALSSQIVIVMLGSAV 164 Query: 161 TSIIGFIELSKAGTVITNATFRPFTVFAI 189 S I ELS A I FR F + I Sbjct: 165 CSQIAVEELSFAANFIQGRNFRAFEAYLI 193 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.331 0.141 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 437,879 Number of extensions: 15587 Number of successful extensions: 90 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 88 Number of HSP's successfully gapped: 4 Length of query: 218 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 138 Effective length of database: 925,261 Effective search space: 127686018 Effective search space used: 127686018 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 127 (53.5 bits)