BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4105.p (223 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 312 1e-86 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 97 9e-22 gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 92 2e-20 gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 86 3e-18 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 312 bits (800), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 185/222 (83%), Positives = 206/222 (92%) Query: 1 MAYQFDFLSTLDYSDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPIVSGY 60 MAYQF+FLST DYS V+VKGV TT+ELIA+GGVLGVAVGIFGAWARTQ P WL+P+VS Y Sbjct: 1 MAYQFEFLSTFDYSGVLVKGVLTTVELIAVGGVLGVAVGIFGAWARTQEPRWLRPVVSAY 60 Query: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEMQAAILAMVINLGAYSTEIIRAGVQAIPRGQ 120 VE+IRNTPFL+QLFFIFFGLPS+ + I+EMQAAILAMVINLGAYSTEIIRAGV A+ RGQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPSIGVQITEMQAAILAMVINLGAYSTEIIRAGVVAVARGQ 120 Query: 121 IEAAQSLSMSRSQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYI 180 IEAA SLSM+R QIFRHIILRPALQKIWPALSSQ+VIVMLGSAVCSQIAVEELSFAAN+I Sbjct: 121 IEAALSLSMTRVQIFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QGRNFRAFEAYIVATAIYLVLSILLRQLLRLIGHYFITARRN 222 QGRNFRAFEAY++ATAIYL+L+ILLRQ+LRLIG FI AR + Sbjct: 181 QGRNFRAFEAYLIATAIYLLLAILLRQILRLIGTRFIFARSS 222 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 97.1 bits (240), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 110/209 (52%), Gaps = 11/209 (5%) Query: 15 DVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPIVSGYVEIIRNTPFLVQLF 74 + ++ G+ T+ + + VG RT WL + YVE+ RN P LVQ F Sbjct: 19 ESLLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLGGAYVELFRNIPLLVQFF 78 Query: 75 FIFFGLPSLD-------IHISEMQAAILAMVINLGAYST----EIIRAGVQAIPRGQIEA 123 +F +P L I + + + V+ LG +++ E +R+G+QA+PRGQ A Sbjct: 79 VWYFVVPGLVPAVKAWVITLDPTEHQFVTAVVCLGFFTSSRIAEQVRSGIQALPRGQRNA 138 Query: 124 AQSLSMSRSQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYIQGR 183 +L ++ +Q +R+++L A + I P L+S+++ ++ +AV I + EL F + Sbjct: 139 GYALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEM 198 Query: 184 NFRAFEAYIVATAIYLVLSILLRQLLRLI 212 FR FEA+ AT IY+V+++ +L+ L+ Sbjct: 199 TFRYFEAFGAATLIYVVIAMTANRLMALV 227 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 89/177 (50%) Query: 46 RTQGPGWLKPIVSGYVEIIRNTPFLVQLFFIFFGLPSLDIHISEMQAAILAMVINLGAYS 105 RT G L+ + Y+EI + TP L+QLF +FFG+ I + AA L + + ++ Sbjct: 42 RTSKSGALRNVARIYIEIFQGTPLLMQLFLVFFGIALFGIEVPAWLAAGLTLTLWSASFL 101 Query: 106 TEIIRAGVQAIPRGQIEAAQSLSMSRSQIFRHIILRPALQKIWPALSSQVVIVMLGSAVC 165 EI R V+AIPRGQ EA+ L+M+ Q R++IL AL+ P V ++ G+AV Sbjct: 102 AEIWRGCVEAIPRGQWEASSVLAMNYVQQMRYVILPQALRIALPPTIGFSVQIIKGTAVT 161 Query: 166 SQIAVEELSFAANYIQGRNFRAFEAYIVATAIYLVLSILLRQLLRLIGHYFITARRN 222 S I ELS AA I F F Y A Y +L L + + + F A + Sbjct: 162 SIIGFVELSKAATVITNATFMPFTVYAAAGLFYFILCWPLSRYSQFLERKFHAAHSH 218 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 85.5 bits (210), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 106/213 (49%), Gaps = 9/213 (4%) Query: 17 IVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPIVSGYVEIIRNTPFLVQLFFI 76 ++ G+ T++L + GV G A AR L I + YV ++R+ P L+ +F+ Sbjct: 16 LLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSLIAAAYVNLMRSIPLLLVIFWF 75 Query: 77 FFGLPSL---------DIHISEMQAAILAMVINLGAYSTEIIRAGVQAIPRGQIEAAQSL 127 +F +P + + + ++A + ++ AY EI+RAG+Q+I +GQ+ A +L Sbjct: 76 YFLMPIVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSISKGQVNAGYAL 135 Query: 128 SMSRSQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANYIQGRNFRA 187 ++ Q + ++L A + + P L +Q +++ ++ S + V + AA + R+ R Sbjct: 136 GLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGAAVKVAQRDSRV 195 Query: 188 FEAYIVATAIYLVLSILLRQLLRLIGHYFITAR 220 E Y+ +Y VLS L L++ + F R Sbjct: 196 VEMYLFVAIVYFVLSFALSTLVKQLQKRFAIIR 228 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.141 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 379,005 Number of extensions: 11983 Number of successful extensions: 52 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 50 Number of HSP's successfully gapped: 4 Length of query: 223 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 143 Effective length of database: 925,261 Effective search space: 132312323 Effective search space used: 132312323 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)