BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4104.p
         (260 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981681|ref|YP_001351726.1| ABC transporter substrate bindi...   425   e-120

>gi|152981681|ref|YP_001351726.1| ABC transporter substrate binding
           protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score =  425 bits (1092), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/260 (80%), Positives = 235/260 (90%), Gaps = 1/260 (0%)

Query: 1   MKLTKLLLGLLAGAMMFSASVAHADALDDIQKHGTLRVAVPADFPPFGSVDSDLKPQGLD 60
           MKL+ +L+GL+AGA++ + +VA ADALDDIQK G LRVAVP DFPPFGSV +D+ PQGLD
Sbjct: 1   MKLSTILIGLMAGALLLT-NVARADALDDIQKKGVLRVAVPQDFPPFGSVTTDMTPQGLD 59

Query: 61  IDVAGLIAKKLGVKVELIPVSSANRIPYLTTRKVDLVISSMGKNAEREKVIDFTAAYAPF 120
           IDVA LIAKKLGVKVELIPV+SANRIPYL T+KVDLVISSMGKN EREKVIDF+AAYAPF
Sbjct: 60  IDVATLIAKKLGVKVELIPVTSANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAAYAPF 119

Query: 121 FNGVFGPADLPVKSAADLAGKTIAVTRGSVEDLELSKIVPASATVKRYEDNNSTISSFLS 180
           FNGVFGPAD  V + ADLAGKTI VTRGSVEDLELSKI P SAT+KRYEDNN TISSFLS
Sbjct: 120 FNGVFGPADQKVAAPADLAGKTIGVTRGSVEDLELSKIAPESATIKRYEDNNGTISSFLS 179

Query: 181 GQVQLVATGNVVAAAIIAKNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAEAKK 240
            QVQLVATGNV+AAAIIAKNPPKKPETKFLIK+SPC IGLNKGE+KL +KV+AI+A+AKK
Sbjct: 180 NQVQLVATGNVIAAAIIAKNPPKKPETKFLIKNSPCSIGLNKGEEKLLEKVNAIIAQAKK 239

Query: 241 DGSLNAISQKWLGLPLPAGL 260
           DGSLN +++KWLGLPLPA L
Sbjct: 240 DGSLNTLTEKWLGLPLPASL 259


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 524,555
Number of extensions: 20088
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 260
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 179
Effective length of database: 921,564
Effective search space: 164959956
Effective search space used: 164959956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)