BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4103.p (249 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982693|ref|YP_001351727.1| GntR family transcriptional reg... 332 9e-93 gi|152982557|ref|YP_001351913.1| GntR family transcriptional reg... 110 6e-26 gi|152982451|ref|YP_001355369.1| GntR family transcriptional reg... 104 6e-24 gi|152980771|ref|YP_001354254.1| GntR family transcriptional reg... 71 6e-14 gi|152982462|ref|YP_001351801.1| GntR family transcriptional reg... 62 4e-11 >gi|152982693|ref|YP_001351727.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 284 Score = 332 bits (852), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 170/229 (74%), Positives = 189/229 (82%), Gaps = 2/229 (0%) Query: 1 MSTNSSVKSSSQIAIRITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTHLMARGI 60 M++ ++KSS QIA RITE+ILAKQLAPGTRLGEQQLADLFGVSRT +REAL L RGI Sbjct: 1 MTSEQTLKSSIQIAARITESILAKQLAPGTRLGEQQLADLFGVSRTLIREALMRLATRGI 60 Query: 61 VTVSARRGWYVIEPTPEQAREAFEARRVIELGLLRQARVRPIGSEAIRQLREHIAREEAA 120 V VSARRGW+VIEPT +AREAFEARRVIELGLLR AR P+ AI QLREHIARE+AA Sbjct: 61 VMVSARRGWFVIEPTASEAREAFEARRVIELGLLRHAR--PLSKHAIGQLREHIAREQAA 118 Query: 121 IAGADVGVRSYLLGDFHVCLCECLGNSLLSETLRDLTARTTLTAMLHQSSEQAEDSCSEH 180 IAG DVG RSYLLGDFHVCLCECLGN+LLS+TLRDLTARTTLTAML QSS QA DSC +H Sbjct: 119 IAGDDVGARSYLLGDFHVCLCECLGNNLLSDTLRDLTARTTLTAMLRQSSSQAVDSCEDH 178 Query: 181 VLIVEALERGDLEQAEQLMHTHLQHVESGLNQVRSSDPLEPLRQALASV 229 V IV ALE GD+++AE+LM HLQ VES L ++ SDPL LR AL V Sbjct: 179 VHIVAALESGDIDEAERLMLEHLQVVESTLYELAPSDPLNALRTALTPV 227 >gi|152982557|ref|YP_001351913.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 236 Score = 110 bits (276), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 1/233 (0%) Query: 1 MSTNSSVKSSSQIAIRITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTHLMARGI 60 M + + +I +TEA+LA++L PGT+L E ++AD+FGV RT +R+AL L + Sbjct: 1 MPSPDLATPTQRIVDAVTEAVLAQRLVPGTKLNEAEMADIFGVGRTVIRQALIRLSQDKL 60 Query: 61 VTVSARRGWYVIEPTPEQAREAFEARRVIELGLLRQARVRPIGSEAIRQLREHIAREEAA 120 VT+ RG ++ E + + RE FE ++E L + ++ I + I +LR+HIA + A Sbjct: 61 VTIEHNRGAHITELSDLEIRETFEVLAMLECAALEKF-IKTITAFDIAKLRQHIAHQSGA 119 Query: 121 IAGADVGVRSYLLGDFHVCLCECLGNSLLSETLRDLTARTTLTAMLHQSSEQAEDSCSEH 180 D+ L DFHV + N +L + LTA+ L + C +H Sbjct: 120 HQHHDIDQEFRLGPDFHVLIVGLAHNRVLEDIHGKLTAQERLITSQYYGEFDHVHLCQDH 179 Query: 181 VLIVEALERGDLEQAEQLMHTHLQHVESGLNQVRSSDPLEPLRQALASVTRRG 233 +++ +E GDL +A+QL+ H + +ES + + PL +A + G Sbjct: 180 SQLIDLIESGDLARAQQLLIGHYRTLESYCIGRKQRKAMIPLNEAFRDLVDTG 232 >gi|152982451|ref|YP_001355369.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 220 Score = 104 bits (259), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 7/213 (3%) Query: 17 ITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTHLMARGIVTVSARRGWYVIEPTP 76 I+ AI ++L PGT+L E++LA++FGVSRT +R+AL L ++T+S +R V P+ Sbjct: 10 ISGAIYERRLPPGTKLNERELAEIFGVSRTVIRQALIRLSQEELITISPKRASQVAHPSF 69 Query: 77 EQAREAFEARRVIELGLLRQARVRPIGSEAIRQLREHIAREEAAIAGADVGVRSYLLGDF 136 ++A + ++ V+E G++ ++ I E I LREH A+E AA D + L F Sbjct: 70 QEAFDLYQILHVVESGVV-DILMQTITPEQIAMLREHTAKEHAAFKAEDHDLADKLGRGF 128 Query: 137 HVCLCECLGNSLLSETLRDLTARTTLTAMLHQSSEQAEDSC---SEHVLIVEALERGDLE 193 H L CL N L+ L + L L++ D C EH+ +V++LE D Sbjct: 129 HTLLISCLANEPLNNMHARLRRKEALITALYKVD---FDYCHLRGEHIALVDSLETRDSF 185 Query: 194 QAEQLMHTHLQHVESGLNQVRSSDPLEPLRQAL 226 +A+QL+ +H V G S P LR AL Sbjct: 186 RAKQLLASHNNLVIKGYRFEIGSAPDIDLRAAL 218 >gi|152980771|ref|YP_001354254.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 71.2 bits (173), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 95/204 (46%), Gaps = 3/204 (1%) Query: 1 MSTNSSVKSSSQIAIRITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTHLMARGI 60 M+ N+ +S + + +I E I L PG L E LA+ FGVSRT +REAL L + GI Sbjct: 7 MTDNTQTRSET-LREQIEEMIAVGTLKPGQHLDETVLAERFGVSRTPIREALIQLASMGI 65 Query: 61 VTVSARRGWYVIEPTPEQAREAFEARRVIELGLLRQARVRPIGSEAIRQLREHIAREEAA 120 V + RRG V E P+Q E FE +E R A R +E + H+A ++A Sbjct: 66 VVIRPRRGAIVAEIGPQQLIEMFEVMAELEAMCARLAARRMSPAEHAILMATHLACKQAR 125 Query: 121 IAGADVGVRSYLLGDFHVCLCECLGNSLLSETLRDLTARTTLTAMLH-QSSEQAEDSCSE 179 AD Y +FH + N+ L E R L R L + + S E Sbjct: 126 -DDADSDAYFYKNEEFHQQIYIGSKNTFLEEQARALQRRLRPYRRLQLRVRNRVTASFDE 184 Query: 180 HVLIVEALERGDLEQAEQLMHTHL 203 H +V+A+ G + A +L+ H+ Sbjct: 185 HGAVVDAIIEGKGDLAAELLRQHI 208 >gi|152982462|ref|YP_001351801.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 258 Score = 61.6 bits (148), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 7/195 (3%) Query: 2 STNSSVKSSSQIA-IRITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTHLMARGI 60 S SV SSS+ A +RI EAI+ ++ PG+ + E L+D+ G RT VREA+ L + Sbjct: 26 SPRPSVASSSERAYLRIEEAIVTMEIQPGSDVNEAFLSDVAGFGRTPVREAVRKLCFEHL 85 Query: 61 VTVSARRGWYVIEPTPEQAREAFEARRVIELGLLRQA--RVRPIGSEAIRQLREHIAREE 118 + V +RG YV E P E RR I+ + + A R P L E+ R Sbjct: 86 LVVKPKRGIYVTEVDPVAQLRLLEVRREIDRLVFQNAARRATPEQRRQFALLGENFRRAS 145 Query: 119 AAIAGADVGVRSYLLGDFHVCLCECLGNSLLSETLRDLTARTTLTAMLH-QSSEQAEDSC 177 A A + +R+ +F+ C N L+++LR + + H +S + + Sbjct: 146 QA-ADKMLFIRND--KEFNELCLNCARNEFLTDSLRSIQGLSRRFWFCHYKSFDYLSVTA 202 Query: 178 SEHVLIVEALERGDL 192 H + EA+ G++ Sbjct: 203 LLHAGVAEAIAYGNV 217 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.129 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 426,388 Number of extensions: 13545 Number of successful extensions: 85 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 79 Number of HSP's successfully gapped: 8 Length of query: 249 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 168 Effective length of database: 921,564 Effective search space: 154822752 Effective search space used: 154822752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)