BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4101.p (290 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980647|ref|YP_001352738.1| AraC family transcriptional reg... 335 2e-93 gi|152982248|ref|YP_001354010.1| AraC family transcriptional reg... 157 5e-40 gi|152982202|ref|YP_001353604.1| AraC family transcriptional reg... 107 1e-24 gi|152982321|ref|YP_001353346.1| AraC family transcriptional reg... 103 1e-23 >gi|152980647|ref|YP_001352738.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 259 Score = 335 bits (859), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 166/265 (62%), Positives = 200/265 (75%), Gaps = 9/265 (3%) Query: 1 MTTLYASLIEHDPDRLSAAVTALRVYTNHNERETPLHSHRKGQLVVALHGAVTCETTQGM 60 M TL S I+++ DRL ALR+ T +E E+P+H HRKGQLVVALHG VTCE G+ Sbjct: 1 MVTLLGS-IDYNADRLFQPAVALRIDTEGSESESPIHMHRKGQLVVALHGGVTCEVPGGL 59 Query: 61 WIVPPQSAVWIPPGVPHSNRVTPDGQLCFLFIAPHATSLPDHCCTLALTPLLVQMICHLA 120 W+VPPQ VWIP G+PHSNR T + +LCFLF+ P A SLP C TLALTPL+ +MI HLA Sbjct: 60 WMVPPQCGVWIPGGMPHSNRATANARLCFLFVEPGAASLPGECATLALTPLIREMILHLA 119 Query: 121 ELPQDYAPHERTARLAAVLVEELESSQRHVLP---LHLPMPQHWRLREIARHLSEHPADR 177 +LPQ Y P TA+L VL+ EL ++P LHLP+ H RLR+IA L++HP DR Sbjct: 120 DLPQHYPPDGHTAKLVEVLLSELV-----MMPTEQLHLPVSDHARLRQIASALTQHPDDR 174 Query: 178 STVAEWGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGY 237 STVAEWG+R AMSER+ AR V ETGM+FGRWRRQ+HL++ALQRLASG+SVQRVS+DLGY Sbjct: 175 STVAEWGERFAMSERTLARLVLNETGMTFGRWRRQLHLIIALQRLASGASVQRVSEDLGY 234 Query: 238 DSVSAFITMFKKTLGKPPARYMAQR 262 DSVSAFITMFKK LGK PARY + + Sbjct: 235 DSVSAFITMFKKALGKSPARYFSDK 259 >gi|152982248|ref|YP_001354010.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 263 Score = 157 bits (398), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 3/224 (1%) Query: 37 HSHRKGQLVVALHGAVTCETTQGMWIVPPQSAVWIPPGVPHSNRVTPDGQLCFLFIAP-H 95 H H +GQL+ A GA+ T G W+VPPQ AVW+PPG+ HS + + ++ +++ P H Sbjct: 34 HQHPRGQLIYAYSGAILVMTELGSWVVPPQRAVWVPPGMMHSMQACGNVEMRTVYVRPDH 93 Query: 96 ATSLPDHCCTLALTPLLVQMICHLAELPQDYAPHERTARLAAVLVEELESSQRHVLPLHL 155 CC +++ PLL ++I + +P Y R L +L+ E++ Q V+ LHL Sbjct: 94 IPPELTGCCVVSVPPLLRELIAAMVHIPLHYDEAGRDGLLVQLLLHEIKPLQ--VVRLHL 151 Query: 156 PMPQHWRLREIARHLSEHPADRSTVAEWGQRHAMSERSFARFVQAETGMSFGRWRRQIHL 215 PMP RL +I + + P+D +TV EW + S R+ R +TG++F +W++Q L Sbjct: 152 PMPSDPRLAKICQRILNEPSDETTVDEWSKFIGASARTIVRLFPEQTGLTFSQWKQQARL 211 Query: 216 MLALQRLASGSSVQRVSQDLGYDSVSAFITMFKKTLGKPPARYM 259 + A+Q LA+ +V ++ LGY+S SAF MFK+ +G P Y Sbjct: 212 LAAIQMLATNKNVTDIALQLGYESPSAFSAMFKRAIGLTPTEYF 255 >gi|152982202|ref|YP_001353604.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 255 Score = 107 bits (266), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 117/226 (51%), Gaps = 3/226 (1%) Query: 35 PLHSHRKGQLVVALHGAVTCETTQGMWIVPPQSAVWIPPGVPHSNRVTPDGQLCFLFIAP 94 P H H QL+ AL G +T ET G W+VPP VW+ P V H + D ++ +F+ P Sbjct: 31 PPHRHAYAQLLYALEGVLTVETQDGRWVVPPTRGVWLQPDVDHQVSMRGDVKMRTVFVNP 90 Query: 95 -HATSLPDHCCTLALTPLLVQMICHLAELPQDYAPHERTARLAAVLVEELESSQRHVLPL 153 +LP C L + LL ++I + + R L +LV EL S L L Sbjct: 91 TFLPNLPQQSCVLDIPLLLRELIVSAISITPELQVGSRDWHLLHLLVLELRSVPVLPLYL 150 Query: 154 HLPMPQHWRLREIARHLSEHPADRSTVAEWGQRHAMSERSFARFVQAETGMSFGRWRRQI 213 LP RLREI + +P ++++VAE +S R+F R ETGM +G WR+Q Sbjct: 151 PLPADS--RLREICQQTMAYPDEQNSVAEQAAILGISTRTFHRLFLRETGMRYGHWRQQA 208 Query: 214 HLMLALQRLASGSSVQRVSQDLGYDSVSAFITMFKKTLGKPPARYM 259 L+LAL+RLA G V V+ + GY S SAF MFKK P+R+ Sbjct: 209 RLLLALERLARGDKVIDVALEHGYSSQSAFAAMFKKHFDISPSRFF 254 >gi|152982321|ref|YP_001353346.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 249 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 16/233 (6%) Query: 36 LHSHRKGQLVVALHGAVTCETTQGMWIVPPQSAVWIPPGVPHSNRVTPDGQLCFLFIAPH 95 LH HR+ QL+ A G + T +G W+VPP AVW+PPG+ H+ + D ++ L I P Sbjct: 16 LHVHREAQLLFASSGVMQVTTPKGHWLVPPARAVWLPPGIEHAVDMLADIEMRALLIQPE 75 Query: 96 ATSLPDHCC--------TLALTPLLVQMICHLAELPQDYAPHERTARLAAVLVEELESSQ 147 L H + PLL + I L D P L L E +E Sbjct: 76 --QLAQHPAAPRLQSEFVATVGPLLRETI--LGAFKADSHPQRLALLLELALFELVEDED 131 Query: 148 RHVLPLHLPMPQHWRLREIARHLSEHPADRSTVAEWGQRHAMSERSFARFVQAETGMSFG 207 +PMP R R +A + PA+ S + S R+ R AET ++F Sbjct: 132 ARTF---MPMPHDARARRVADMILADPANGSELELLAYSAGASARTITRLFPAETNLTFK 188 Query: 208 RWRRQIHLMLALQRLASG-SSVQRVSQDLGYDSVSAFITMFKKTLGKPPARYM 259 WR++ +M A++ L +G +S+++++ LG+ SV++F F++ +G P+ M Sbjct: 189 EWRQRARIMAAVEALGNGQTSIKQLALQLGFSSVASFGHAFRQIMGMTPSEMM 241 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.132 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 641,936 Number of extensions: 24052 Number of successful extensions: 99 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 4 Length of query: 290 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 208 Effective length of database: 917,867 Effective search space: 190916336 Effective search space used: 190916336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)