BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4092.p
         (437 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980910|ref|YP_001353544.1| major facilitator transporter [...   494   e-141
gi|152980838|ref|YP_001354006.1| major facilitator transporter [...    59   4e-10

>gi|152980910|ref|YP_001353544.1| major facilitator transporter
           [Janthinobacterium sp. Marseille]
          Length = 436

 Score =  494 bits (1272), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/435 (55%), Positives = 325/435 (74%), Gaps = 2/435 (0%)

Query: 5   STTGVGLDVNDKSK--DGLYKKVFWRIMPFLMLCYVIAYLDRVNVGFAKLQMSQDLGFSE 62
           S+  +    +D++K  D +Y KV  R++PFL LCYV AYLDRVNVGFAKL M  DL FSE
Sbjct: 2   SSIPLSTTASDRTKLEDSIYAKVTLRLLPFLFLCYVAAYLDRVNVGFAKLSMLNDLQFSE 61

Query: 63  TVFGLGAGLFFIGYFLFEVPSNILMHKVGARIWIARIMITWGILSAAFMFVQNATQFYIL 122
           T++GLGAG+FFIGYFLFEVPSNI+MHKVGAR WIARIMITW ILSAA MFV   T FY++
Sbjct: 62  TIYGLGAGIFFIGYFLFEVPSNIIMHKVGARRWIARIMITWSILSAATMFVTTPTMFYVI 121

Query: 123 RFLLGLAEAGFYPGIILYLTYWFPSHRRAKVIAVFMSGIPVAGILGNPLSGWIMDAFHNN 182
           RFLLG+AEAGF+PGI+LYLTYWFP+ RR ++ A+FM GIP+AG++G PLSGWIM+AF   
Sbjct: 122 RFLLGVAEAGFFPGIVLYLTYWFPTSRRGRMNALFMIGIPIAGVVGGPLSGWIMNAFAGM 181

Query: 183 GGLEGWQWMFLIEAIPAVLIGVATVLYLDNDVKSAKWLTDEEKASLQADIDGDAKGKESK 242
            G  GWQW+FL+EA+P++ +G+ T+ YL N ++++ WL++ EKA L+A+I  D    +  
Sbjct: 182 NGWHGWQWLFLLEALPSLALGIMTLFYLPNSIRASSWLSENEKAILEANIAKDNSVGDKS 241

Query: 243 HGFGAIVKDARVWLMCLIYFSFVMGQYGLTLWMPTLVKATGVKGNLEIGLLSAIPFGCAI 302
           H    +  + +VWLM  IYF  +MG YG++ ++PTLVKA+GVK  L++GLL+AIP+ C +
Sbjct: 242 HSVAGVFTNPKVWLMAAIYFCCMMGLYGISFYLPTLVKASGVKDALDVGLLTAIPYTCGV 301

Query: 303 VAMNLIGRSADRLRERRWHLVVPALMGGVGFVGAALFADNTAVSIASLSLAAAGVLTCAP 362
           +A  L+ RSADR+RERRWH  + + +GG+G   + ++ DN  +++ +LSL  AG+L+  P
Sbjct: 302 IATLLVARSADRMRERRWHFAIASALGGLGLFLSTVYGDNVVLALMALSLGTAGMLSTMP 361

Query: 363 LFWSLPTAFLSGAAAAVGIAAINSVGNLAGFVSPYLIGYLKDLTHNNATGMYMLAVMLVV 422
           +FW+ P+A L GAAAA GI  INSVGNLAGFVSP ++G+LKD+T +   GMY +A  LV+
Sbjct: 362 VFWTYPSAILGGAAAAAGIGLINSVGNLAGFVSPTIVGWLKDVTGSTNAGMYFVAGALVL 421

Query: 423 GSIATLATKPDVVNK 437
           G+   L     +VNK
Sbjct: 422 GACLALLQPRSLVNK 436


>gi|152980838|ref|YP_001354006.1| major facilitator transporter
           [Janthinobacterium sp. Marseille]
          Length = 462

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 113/263 (42%), Gaps = 42/263 (15%)

Query: 54  MSQDLGFSETVFGL---GAGLF----FIGYFLFEVPSNILMHKVGARIWIARIMITWGIL 106
           M+  LG  +T FGL    AG+     F+G  L  V S +L  K G +      MI WG+ 
Sbjct: 47  MAYLLGSIKTEFGLTTAQAGMLGSASFVGMALGAVSSGMLADKFGRKPIFQISMIIWGVA 106

Query: 107 SAAFMFVQNATQFYILRFLLGLAEAGFYPGIILYLTYWFPSHRRAKVIAVFMSGIPVAGI 166
           S       +     I R LLG+      P     L+ + P+ RR K +A+     P+A I
Sbjct: 107 SYLCSTANDPVSLAIYRVLLGIGMGMELPLAQTLLSEFIPAKRRGKYLALMDGNWPIAFI 166

Query: 167 LGNPLSGWIMDAFHNNGGLEGWQWMFLIEAIPAVLIGVATVLYLDNDVKSAKWLTDE--- 223
               +S +++ ++        W+ MFL+ AIPAV + V    Y+    +S +WL  +   
Sbjct: 167 CAGLMSYYVLASYS-------WRTMFLLGAIPAVFLFVIR-RYVP---ESPRWLESKGRH 215

Query: 224 -EKASLQADIDGDAKGKESKHGFGAIVKDA--------------------RVWLMCLIYF 262
            E +++   I+G+ K          IV+ A                    R   +  ++F
Sbjct: 216 AEASNIVDGIEGEVKKILKVDSLPPIVQTAMMRDQEAFGIKVLWSPVYRRRTLTVWGLWF 275

Query: 263 SFVMGQYGLTLWMPTLVKATGVK 285
             ++G YGL  W+  L++ +G++
Sbjct: 276 FALLGFYGLNTWIGALLQQSGLE 298


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 971,285
Number of extensions: 40002
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 3
Length of query: 437
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 351
Effective length of database: 903,079
Effective search space: 316980729
Effective search space used: 316980729
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)