BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4090.p
         (203 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979864|ref|YP_001353782.1| chemoreceptor glutamine deamida...   303   7e-84

>gi|152979864|ref|YP_001353782.1| chemoreceptor glutamine deamidase
           CheD [Janthinobacterium sp. Marseille]
          Length = 203

 Score =  303 bits (775), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 140/196 (71%), Positives = 172/196 (87%), Gaps = 1/196 (0%)

Query: 9   ENFASYVYHDKAFDCATAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVTGVGGMNHFM 68
           E+FA+ VY+D+ FD   AKILPGEY+YTG+DM+IVTVLGSCVSAC+RDRVTGVGGMNHFM
Sbjct: 7   EHFATNVYYDRTFDRDAAKILPGEYYYTGKDMLIVTVLGSCVSACIRDRVTGVGGMNHFM 66

Query: 69  LPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMTAMNVG 128
           LPDGGG+ADSP+SAS RYGTYAME+LIND+LKAGARRENLE KVFGGG VL G +++NVG
Sbjct: 67  LPDGGGDADSPISASARYGTYAMEILINDLLKAGARRENLEAKVFGGGNVLSGFSSINVG 126

Query: 129 ERNAAFVKNYLSAEKIRVVAEDLNDVWPRKVHFFPRTGKVLVKKIKDAGAD-LVSREREY 187
           ERNA FV+N+L  E IR+VAEDLNDV PRKV++FPR GKVLVKK++    + LV+RE++Y
Sbjct: 127 ERNAQFVRNFLKVENIRIVAEDLNDVHPRKVYYFPRNGKVLVKKLRQLNNNTLVNREQDY 186

Query: 188 ASKLQAKPVGGEIDLF 203
           A++LQ+  V G+++LF
Sbjct: 187 ANRLQSGSVSGDVELF 202


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 475,462
Number of extensions: 18898
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 124
Effective length of database: 928,958
Effective search space: 115190792
Effective search space used: 115190792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)