BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4089.p
         (548 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981056|ref|YP_001353385.1| malate:quinone oxidoreductase [...   749   0.0  
gi|152982928|ref|YP_001353384.1| hypothetical protein mma_1694 [...    90   3e-19

>gi|152981056|ref|YP_001353385.1| malate:quinone oxidoreductase
           [Janthinobacterium sp. Marseille]
          Length = 445

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/447 (80%), Positives = 396/447 (88%), Gaps = 3/447 (0%)

Query: 102 KAIEINESFQISRQFWSWQVKNGVLKNPRSFINSTPHMSFIWGEDNVTFLKKRYQALQAS 161
           KAIEINE+FQISRQFW+WQVKNG+LKNPRSFINSTPHMSF+WG++N+ +LKKRY ALQAS
Sbjct: 2   KAIEINEAFQISRQFWAWQVKNGILKNPRSFINSTPHMSFVWGDENIKYLKKRYDALQAS 61

Query: 162 PLFAGMQYSEDHEQIKKWVPLMMEGRDPNQKLAATWSPLGTDVNFGEITRQFAAYLQSRP 221
           PLF GMQYSED EQIKKWVPLMMEGR  NQK+AATW+P+GTDVNFGEITRQF A LQS+P
Sbjct: 62  PLFRGMQYSEDPEQIKKWVPLMMEGRPANQKIAATWTPIGTDVNFGEITRQFVANLQSKP 121

Query: 222 NFALKLSSEVRDITRNADGTWRISYKNLKDGSLTETDAKFVFIGAGGGALKLLQKSGIPE 281
           NF+LKLSSEV+DITRN DGTWRI+YKNLKDG+ TETDAKFVFIGAGGGAL LLQKSGIPE
Sbjct: 122 NFSLKLSSEVQDITRNGDGTWRIAYKNLKDGTKTETDAKFVFIGAGGGALHLLQKSGIPE 181

Query: 282 ARDYAAFPVGGSFLITDNPAIAERHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGP 341
           A +YA FPVGGSFL+T+NPAIAERHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGP
Sbjct: 182 ANEYAGFPVGGSFLVTENPAIAERHLAKAYGKASVGAPPMSVPHLDTRVLDGKRVILFGP 241

Query: 342 FATFSTKFLKQGSLWDLFSATTTHNVWPMARVGIDEYPLVEYLAGQLMLSDDQRFAALKE 401
           FATFSTKFLK+GS +DL ++TTTHNVWPM +VG+ EYPLVEYLAGQLMLSDD R  AL+E
Sbjct: 242 FATFSTKFLKEGSYFDLITSTTTHNVWPMVKVGVAEYPLVEYLAGQLMLSDDDRLKALQE 301

Query: 402 YFPNAKKEDWRLWQAGQRVQIIKRDDQKGGVLKLGTEIVASADGSMAGLLGASPGASTAA 461
           YFPNAKKEDWRLWQAGQRVQIIKRD  KGGVLKLGTE+VAS DGS+AGLLGASPGASTAA
Sbjct: 302 YFPNAKKEDWRLWQAGQRVQIIKRDADKGGVLKLGTEVVASKDGSIAGLLGASPGASTAA 361

Query: 462 PIMLNVLQKVFKDKLATPEWQQKVRQIVPSYGIKLNDHPDQVAKEWAYTAEVLQLAPPPV 521
           PIML+VL+KVFKDK+A+P WQ K+RQIVPSYG KLND PD+V +EW  T ++LQL PPP 
Sbjct: 362 PIMLDVLKKVFKDKVASPAWQSKIRQIVPSYGTKLNDSPDKVYQEWLSTGQILQLTPPPA 421

Query: 522 IAPKAAKDAVNGSMEKPKANAAADMAL 548
           I       A      K     AAD+AL
Sbjct: 422 IDRTVVPQAAPAPQPK---REAADLAL 445


>gi|152982928|ref|YP_001353384.1| hypothetical protein mma_1694
          [Janthinobacterium sp. Marseille]
          Length = 59

 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 51/60 (85%), Gaps = 1/60 (1%)

Query: 1  MLKKSFLAMLGFVVALVVTPASQAADIKKVDVLLVGGGIMSTTLAVWLNELEPGWSMEMV 60
          M KK++LA+ GF+  LVVTP   AA++KKVDV+L+GGGIMS TL +WLNELEPGWSMEMV
Sbjct: 1  MFKKNYLAIFGFIFTLVVTPL-HAAEVKKVDVMLIGGGIMSATLGIWLNELEPGWSMEMV 59


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,273,793
Number of extensions: 53223
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 548
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 460
Effective length of database: 895,685
Effective search space: 412015100
Effective search space used: 412015100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)