BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4088.p
         (285 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979983|ref|YP_001352751.1| hypothetical protein mma_1061 [...   148   3e-37

>gi|152979983|ref|YP_001352751.1| hypothetical protein mma_1061
           [Janthinobacterium sp. Marseille]
          Length = 299

 Score =  148 bits (374), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/260 (36%), Positives = 141/260 (54%), Gaps = 25/260 (9%)

Query: 15  MLAALLAGCTSDPLRHADAISDRSDLQREEVRGGRFLLTSYVHA------------RKRA 62
           + A LL+ C       A +  +R  L  +E R   F   S+  A            R++A
Sbjct: 20  LAAFLLSAC-------ATSTGERYQLITQEGRAAGFSPVSFGSAPPLTGLLRMQAQRQQA 72

Query: 63  P-LLRVYIEGDGRAWITRSQHSLDPTPITAMGLRLAAN-DGGDVVYLARPCQFTSMTRNP 120
           P  L V IEGDGRAW+   + S+DPTP+ A+G RLA +     V+YLARPCQ+ S     
Sbjct: 73  PAYLWVVIEGDGRAWLNMREPSMDPTPVDAVGWRLAKDISQKTVLYLARPCQYVSSDELD 132

Query: 121 DCQPAYWTGLRYGSEVVTSMDEALSYYVARLQPDRLELVGYSGGGSIAVLLAARRKDVSA 180
            C  A WT  R+  + V  ++ A+       Q  ++ L GYSGGG +A L+AARR DV+ 
Sbjct: 133 ACSVADWTDGRFAEKWVQRLNSAVDQAKRMTQARQIVLAGYSGGGVMAALIAARRDDVAL 192

Query: 181 IRTVAGNLDHVAMNRWHEVSQMPRSLNPIDFAAQVAHIPQLHVSGSEDKVIPTAITRTFV 240
           + TVA  LDH A   +H+V+ +  SL+ +    +++ +PQLHV G++DK++P  + + F+
Sbjct: 193 LMTVASPLDHAAWTSYHKVTPLHASLSVVAVQQKLSRLPQLHVVGADDKIVPPFLLQDFL 252

Query: 241 ARAAPC---AALKVVPGMKH 257
            R  P    A L  +PG+ H
Sbjct: 253 -RGYPTDTPAELVTLPGIDH 271


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 689,036
Number of extensions: 28114
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 203
Effective length of database: 917,867
Effective search space: 186327001
Effective search space used: 186327001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)