BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4085.p (597 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981383|ref|YP_001351716.1| methyl-accepting chemotaxis pro... 251 7e-68 gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis pro... 246 2e-66 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 245 4e-66 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 242 5e-65 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 241 1e-64 >gi|152981383|ref|YP_001351716.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 662 Score = 251 bits (642), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 159/321 (49%), Positives = 225/321 (70%), Gaps = 2/321 (0%) Query: 276 ALLLIVGIASMIGVAVTTKAFRRLGQVSQAMTAIGSGSGDLTQRLPDQGKDEVAIISRSF 335 AL+ + +A+++ A+ + R L Q + TA +GDLT R+ ++ DEV + S Sbjct: 180 ALIATLVLAALLYSAIRSMLLRPLAQATH--TARKLATGDLTIRMENKRTDEVGQLLASI 237 Query: 336 NQFVGQLQNVMLDIHEASEAVRTASNEIATANQDLSSRTESAAASLEQTAASMAEISETV 395 N L NV+ +I ++ + TA+NEIA N DLSSRTE A+SLE+TA++M E++ TV Sbjct: 238 NSIGQGLANVVWNIRNGTKTLSTATNEIAAGNLDLSSRTEQQASSLEETASAMEEMTSTV 297 Query: 396 GRSTAAAQEADQRSSTATEIASQGGKVVSDAVSTMGEIEKVSGQIGAIISVIDGIAFQTN 455 + A A++A+Q + TA+E+A +GG VV++ V+TM I + S +I IISVIDGIAFQTN Sbjct: 298 KENAANAEQANQLARTASEVAVKGGNVVAEVVNTMDSINQSSKKIVDIISVIDGIAFQTN 357 Query: 456 ILALNAAVEAARAGEQGRGFAVVAHEVRSLAQRSAEAAREVKELVETTVSRVSAGSVQVR 515 ILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS+ AARE+K L+E +V++V +GS V Sbjct: 358 ILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSSAAAREIKSLIEDSVNKVQSGSKLVA 417 Query: 516 QAGKTMGEIVTQSADVQSLISGIARATGEQTRGIQEVNRAVTQLDSMVQQNAALVEQSAA 575 AG TM E+V V ++++ I+ A+ EQ+ GI++VN+A+ Q+D + QQNAALVEQ+AA Sbjct: 418 HAGDTMNEVVASIKRVDNIMTEISSASREQSIGIEQVNQAIAQMDQVTQQNAALVEQAAA 477 Query: 576 ASATLQTQANTLASTIGRFRI 596 A+ +LQ+Q L + + F I Sbjct: 478 AAESLQSQTTELNNVVDVFTI 498 >gi|152981410|ref|YP_001352004.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 549 Score = 246 bits (629), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 147/283 (51%), Positives = 202/283 (71%) Query: 314 GDLTQRLPDQGKDEVAIISRSFNQFVGQLQNVMLDIHEASEAVRTASNEIATANQDLSSR 373 GDLT + KDE+ + R+ L+ ++ D+ ++ + TAS EIA N DLSSR Sbjct: 232 GDLTGDIGKPSKDEIGDLMRALGGMNDGLKKIVNDVKAGTDFINTASAEIAHGNLDLSSR 291 Query: 374 TESAAASLEQTAASMAEISETVGRSTAAAQEADQRSSTATEIASQGGKVVSDAVSTMGEI 433 TE AASLE+TA+SM E++ TV ++ AQ+A+Q + +A+++A++GG VV + +STMG I Sbjct: 292 TEQQAASLEETASSMEELTSTVKQNAENAQQANQLAVSASDVAAKGGAVVKEMISTMGAI 351 Query: 434 EKVSGQIGAIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAQRSAEAA 493 S +I II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AA Sbjct: 352 NSSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAA 411 Query: 494 REVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADVQSLISGIARATGEQTRGIQEVN 553 +E+K L+ +VS V AGS V +AGKTM ++V V +++ I A+ EQ+ GI++VN Sbjct: 412 KEIKSLIGDSVSNVDAGSKLVSEAGKTMDDVVNSIRHVTDIMNEIMAASQEQSSGIEQVN 471 Query: 554 RAVTQLDSMVQQNAALVEQSAAASATLQTQANTLASTIGRFRI 596 A++Q+D + QQNAALVE++AAAS +L+ QA+ LA + F++ Sbjct: 472 TAISQMDQVTQQNAALVEEAAAASQSLRDQADKLAQIVNVFKL 514 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 245 bits (626), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 143/283 (50%), Positives = 197/283 (69%) Query: 314 GDLTQRLPDQGKDEVAIISRSFNQFVGQLQNVMLDIHEASEAVRTASNEIATANQDLSSR 373 GDLT + + KDE + + LQ ++ ++ +E + TASNEIA N DLSSR Sbjct: 232 GDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSR 291 Query: 374 TESAAASLEQTAASMAEISETVGRSTAAAQEADQRSSTATEIASQGGKVVSDAVSTMGEI 433 TE A+SLE+TA+SM E++ TV ++ A++A+Q + +A+E+A +GG VVS V TM I Sbjct: 292 TEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSI 351 Query: 434 EKVSGQIGAIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAQRSAEAA 493 + S +I IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AA Sbjct: 352 NESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAA 411 Query: 494 REVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADVQSLISGIARATGEQTRGIQEVN 553 +E+K L+ +V +V G+ V +AG TM EIV V ++ I A+ EQ+ GI+++N Sbjct: 412 KEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQIN 471 Query: 554 RAVTQLDSMVQQNAALVEQSAAASATLQTQANTLASTIGRFRI 596 +A+ Q+D + QQNA+LVE++AAA+ ++Q QA L +G F++ Sbjct: 472 QAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKL 514 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 242 bits (617), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 164/365 (44%), Positives = 236/365 (64%), Gaps = 15/365 (4%) Query: 245 KIRGTDWSIVIAID-----EAEAMAGARSLLNASLLALLLIVGIASMIGVAVT------- 292 ++R S + +ID + E M + + NA L++GI S+I V + Sbjct: 149 EVRPAQLSYLASIDKLIDYQNELMKKSGAEANAKASQTQLLIGIFSIIAVLIAAVFAVLA 208 Query: 293 TKAFRRLGQVSQAMT-AIGSGSGDLTQRLPDQGKDEVAIISRSFNQFVGQLQNVMLDIHE 351 T++ R +SQA+ A GDLT + + KDE + ++ L ++ + Sbjct: 209 TRSITR--PLSQAVVLARKVADGDLTGSIVVESKDETGQLLQALKDMNEGLLKIVTQVRL 266 Query: 352 ASEAVRTASNEIATANQDLSSRTESAAASLEQTAASMAEISETVGRSTAAAQEADQRSST 411 ++ + +AS++IAT N DLSSRTE A+SLE+TA+SM E++ TV ++ A++++Q + + Sbjct: 267 GTDTIASASHQIATGNLDLSSRTEQQASSLEETASSMEELTSTVKQNAENARQSNQLALS 326 Query: 412 ATEIASQGGKVVSDAVSTMGEIEKVSGQIGAIISVIDGIAFQTNILALNAAVEAARAGEQ 471 A+E+A +GG VVS V TMGEI + +I II VIDGIAFQTNILALNAAVEAARAGEQ Sbjct: 327 ASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 386 Query: 472 GRGFAVVAHEVRSLAQRSAEAAREVKELVETTVSRVSAGSVQVRQAGKTMGEIVTQSADV 531 GRGFAVVA EVR+LAQRSA AA+E+KEL+ +V +VS GS V AG TM E+V V Sbjct: 387 GRGFAVVASEVRTLAQRSASAAKEIKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRV 446 Query: 532 QSLISGIARATGEQTRGIQEVNRAVTQLDSMVQQNAALVEQSAAASATLQTQANTLASTI 591 ++S I A+ EQT GI+++N+AV Q+D + QQNAALVE++AAA+ +LQ QA+ L+ + Sbjct: 447 TDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVV 506 Query: 592 GRFRI 596 G F++ Sbjct: 507 GVFKL 511 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 241 bits (614), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 159/334 (47%), Positives = 228/334 (68%), Gaps = 12/334 (3%) Query: 270 LNASLLALLLIVGIASMIGVAVT-------TKAFRRLGQVSQAMTAIGSGSGDLTQRLPD 322 ++A++ ++++ +A++ G+A+ TK +++Q + A GDLT + Sbjct: 185 IDAAIQMMMVLGALAAVGGIALAYWITHSITKPLHEAVKIAQTVAA-----GDLTSVIEA 239 Query: 323 QGKDEVAIISRSFNQFVGQLQNVMLDIHEASEAVRTASNEIATANQDLSSRTESAAASLE 382 + KDE + R+ G L ++ ++ ++EA+ AS +IA+ N DLSSRTE A+SLE Sbjct: 240 KYKDETGQLLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDLSSRTEEQASSLE 299 Query: 383 QTAASMAEISETVGRSTAAAQEADQRSSTATEIASQGGKVVSDAVSTMGEIEKVSGQIGA 442 +TA+SM E++ TV ++ A++A+Q + TA+ +AS+GG VVS V TMG I + +I Sbjct: 300 ETASSMEELTGTVRQNADNARQANQLALTASSVASKGGDVVSQVVDTMGSINDSAKKIAD 359 Query: 443 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAQRSAEAAREVKELVET 502 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AA+E+K L+ Sbjct: 360 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKTLIGD 419 Query: 503 TVSRVSAGSVQVRQAGKTMGEIVTQSADVQSLISGIARATGEQTRGIQEVNRAVTQLDSM 562 +V +V+AGS V AG TM E+V V ++ I A+ EQT GI+++N+AV Q+DS+ Sbjct: 420 SVQKVNAGSRLVDDAGSTMQEVVASVRRVTDIMGEITAASQEQTTGIEQINQAVIQMDSV 479 Query: 563 VQQNAALVEQSAAASATLQTQANTLASTIGRFRI 596 QQNAALVEQ+AAA+A+LQ QA +LA +G F++ Sbjct: 480 TQQNAALVEQAAAAAASLQHQAGSLAQVVGVFKL 513 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.126 0.337 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,063,182 Number of extensions: 40087 Number of successful extensions: 296 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 235 Number of HSP's successfully gapped: 21 Length of query: 597 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 508 Effective length of database: 891,988 Effective search space: 453129904 Effective search space used: 453129904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)