BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4083.p (258 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980907|ref|YP_001351806.1| short chain dehydrogenase [Jant... 87 1e-18 gi|152981275|ref|YP_001354152.1| short-chain alcohol dehydrogena... 84 1e-17 gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Jant... 70 2e-13 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 70 2e-13 gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 63 2e-11 >gi|152980907|ref|YP_001351806.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 263 Score = 87.0 bits (214), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 16/247 (6%) Query: 5 RRILITGATGAIGSALAIRYAAPGIHLLLQGRRSELLAGLQWQCLERGAAVETVTLDLCD 64 +R+ ITGA+ +G+ALA +YA G L L RR+E+L L+ L A + LD+ D Sbjct: 6 QRVFITGASSGLGAALARQYAQQGAVLGLVARRNEVLQELK-AALPNAAEHQVYALDVND 64 Query: 65 RQELAAWL-DQICQAPLPELVILNAGLNTHIGPRGEPEPWAQ----VEAVMEVNLRASI- 118 LA D I A ++VI NAG++ RG +A+ E V N+ A++ Sbjct: 65 HAALAQAAADFINHAQGIDIVIANAGIS-----RGTLTEYAEDLQVFEQVFATNVTATVA 119 Query: 119 ----FIAQRLLPGMLARGYGQLALMSSLAACFGLPVTPAYCATKAGLKAYGQALRGWLSP 174 FIA +L + S+A GLP AY A+K+ + +Y ++LR L Sbjct: 120 TFSPFIATMQTQAAAGHTNCRLVGIGSVAGIRGLPGAGAYSASKSAVISYCESLRVELKK 179 Query: 175 RGIEVNVILPGYVNSPMCHDMPGPKPFLWSARRAAQYIQHGLARNRASISFPFPLNWGAW 234 GI+V I PGY+++PM PFL + A+ +A + P+ + A Sbjct: 180 SGIKVVTIAPGYIDTPMTQVNDYAMPFLMPVGKFAEVATATIAAGCSYRVIPWQMGVVAK 239 Query: 235 WLQILPT 241 L++LP Sbjct: 240 VLRLLPN 246 >gi|152981275|ref|YP_001354152.1| short-chain alcohol dehydrogenase [Janthinobacterium sp. Marseille] Length = 248 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 15/185 (8%) Query: 7 ILITGATGAIGSALAIRYAAPGIHLLLQGRRSELLAGLQWQCLERGAAVETVTLDLCDRQ 66 +L+TGAT G+ +A ++A G ++ GRR + L L E G +V TV +D+ D++ Sbjct: 3 VLVTGATSGFGAEMARKFAQHGHKVIATGRRQDRLDAL---AAEIGPSVLTVAMDVTDKE 59 Query: 67 ELAAWLDQICQAPLP------ELVILNAGLNTHIGPRGEPEPWAQVEAVMEVNLRASIFI 120 +AA L A LP +++I NAGL + P + Q E ++E N + + + Sbjct: 60 SIAAAL-----AGLPPEWKEIDVLINNAGLALGVAP-AQSASLEQWETMIETNCKGLVTV 113 Query: 121 AQRLLPGMLARGYGQLALMSSLAACFGLPVTPAYCATKAGLKAYGQALRGWLSPRGIEVN 180 + LLP ML R G + +SS A + P Y ATKA + + + LR L G+ + Sbjct: 114 TRLLLPEMLKRNRGTIINISSSAGAYAYPGANVYGATKAFVDQFTRNLRADLVGTGVRAS 173 Query: 181 VILPG 185 I PG Sbjct: 174 NIAPG 178 >gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 272 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 94/195 (48%), Gaps = 11/195 (5%) Query: 8 LITGATGAIGSALAIRYAAPGIHLLLQGRRSELLAGLQWQCLERGAAVETVTLDLCDRQE 67 L+TGA+ +G+ A A G ++L RR + L L+ + G A + V+LD+ D Sbjct: 27 LVTGASSGLGARFAKVLAMAGAQVILASRRVDRLKELRAEIEAEGGAAQVVSLDVTDYAS 86 Query: 68 LAAWLDQI-CQAPLPELVILNAGLN-THIGPRGEPEPWAQVEAVMEVNLRASIFIAQRLL 125 + + + + ++++ N+G++ + PE +A +M+ N R + F+AQ + Sbjct: 87 IKSAIAHAETETGAIDILVNNSGVSASQRLVDVTPEDYAH---MMDTNQRGAFFVAQEVA 143 Query: 126 PGMLARGYG---QLALMSSLAACFGLPVTPA---YCATKAGLKAYGQALRGWLSPRGIEV 179 M+AR G + + ++ + GL V P YC +KA + +A+ GI Sbjct: 144 KRMIARHKGDPKKQHRIINIGSVAGLRVVPELGLYCMSKAAVVHMTKAMAVEWGKFGINT 203 Query: 180 NVILPGYVNSPMCHD 194 N I PGY+ + M D Sbjct: 204 NAICPGYIGTEMNLD 218 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 95/197 (48%), Gaps = 10/197 (5%) Query: 5 RRILITGATGAIGSALAIRYAAPGIHLLLQGRRSELLAGLQWQCL--ERGAAVETVTLDL 62 R L+TG G +G A+ I+ AA G ++ A +W L E G D+ Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKAD-EWLKLMKESGYDFHAYPCDV 61 Query: 63 CDRQELAAWLDQICQAPLP-ELVILNAGLNTHIGPR--GEPEPWAQVEAVMEVNLRASIF 119 D + QI + P ++++ NAG+ I + G+P+ W +AVM NL + Sbjct: 62 SDYDSAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPD-W---DAVMATNLDSVFN 117 Query: 120 IAQRLLPGMLARGYGQLALMSSLAACFGLPVTPAYCATKAGLKAYGQALRGWLSPRGIEV 179 + + + GM+ RG+G++ +SS+ G Y A KAG+ + +AL ++ + + V Sbjct: 118 MTKPVCDGMVERGWGRIINISSVNGQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTV 177 Query: 180 NVILPGYVNSPMCHDMP 196 N I PGY+ + M +P Sbjct: 178 NTISPGYIGTKMVMAIP 194 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 62.8 bits (151), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 10/192 (5%) Query: 8 LITGATGAIGSALAIRYAAPGIHLLLQGRRSELLAGLQWQCLERGAAVETVTLDLCDRQE 67 L+TGA+ IG A+A A G ++ SE A + L G + V LD+ D Sbjct: 12 LVTGASRGIGRAIAQELAKLGAKVIGTAT-SESGAAAISEYLGNGG--KGVVLDVNDAAR 68 Query: 68 LAAWLDQICQAPLPELVIL--NAGLN-THIGPRGEPEPWAQVEAVMEVNLRASIFIAQRL 124 A +D+I Q + IL NAG+ + R + E W ++V+ NL A +++ + Sbjct: 69 SVALIDEI-QKEFGAVSILVNNAGITQDQLAMRMKDEEW---DSVIATNLTAVGRLSRAV 124 Query: 125 LPGMLARGYGQLALMSSLAACFGLPVTPAYCATKAGLKAYGQALRGWLSPRGIEVNVILP 184 L GM+ G++ ++S+ G Y A KAG+ +AL + R I VN I P Sbjct: 125 LRGMMKAKTGRIINITSVVGSSGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCIAP 184 Query: 185 GYVNSPMCHDMP 196 G++++ M + Sbjct: 185 GFIDTDMTKTLS 196 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.139 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 660,493 Number of extensions: 26815 Number of successful extensions: 155 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 11 Length of query: 258 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 177 Effective length of database: 921,564 Effective search space: 163116828 Effective search space used: 163116828 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 128 (53.9 bits)