BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4075.p (216 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982247|ref|YP_001353080.1| ABC transporter, ATP-binding/pe... 69 2e-13 gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bica... 68 4e-13 gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding pro... 67 8e-13 gi|152980457|ref|YP_001355073.1| ABC-2 type transport system ATP... 66 1e-12 gi|152982345|ref|YP_001352956.1| ABC-type transport system, invo... 66 1e-12 >gi|152982247|ref|YP_001353080.1| ABC transporter, ATP-binding/permease fusion protein, type I secretion pathway [Janthinobacterium sp. Marseille] Length = 585 Score = 68.9 bits (167), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 26/220 (11%) Query: 3 KLNQVSKSYFTRHGERLILDSVEATVQRGEKVGVLGRNGAGKSTLIRLLGGVEHPSSGSI 62 K+ + S+ + E +L + + GEK+G++GR+G+GKSTL+R L GV P +G + Sbjct: 362 KIQVANLSFSIKPDEPAMLKQISFVINPGEKIGLVGRSGSGKSTLLRCLAGVHAPDTGQV 421 Query: 63 -------------VRRMNISW----PLAFGGAFQGSLSGLDNFRFICRIYGLSHH----D 101 VR +I++ P F G ++ +DN IY + H D Sbjct: 422 LMDGIAVAAYPQEVRMRSIAYKPQDPFLFDGTLASNIF-VDN-AISTSIYQTALHVSCMD 479 Query: 102 RLAQVEDFAELGHYLREPVKTYSTGMRARLAFAISMAVEFDCFLIDEVITVGDARFQTKC 161 L L L P S G R +A A ++A + L+DE T D + K Sbjct: 480 ELLAGGQL-RLDQLLVAP-GNLSGGQRQMVALARAIACTPNVLLLDEPTTGIDQGTENKI 537 Query: 162 RHELFEKRRDRSFVIVSHEVHNIRDYCERVLVLHDRKLLA 201 L R+ V+ +H ++ +R++V+HD K++A Sbjct: 538 IERLVAFAATRTLVVATHSPVLLKQ-MDRIIVIHDGKIVA 576 >gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 433 Score = 67.8 bits (164), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 24/214 (11%) Query: 1 MIKLNQVSKSYFTRHG-ERLILDSVEATVQRGEKVGVLGRNGAGKSTLIRLLGGVEHPSS 59 +I+L V KS+ T G +L+ V+ T+ GE V +LG++G+GKSTL+R++ G+ S Sbjct: 6 LIELKGVDKSFQTADGTPSSVLEQVDFTLTEGEIVALLGKSGSGKSTLLRIMAGLIPADS 65 Query: 60 GSIVRR-MNISWPLA-FGGAFQG-----SLSGLDNFRFICRIYGLSHHDRLAQVEDFAEL 112 GS + R NI P+A FQ L+ N G+ +R + + +L Sbjct: 66 GSAMYRGKNIYGPVAGIAMVFQSFALFPWLTVQQNVELGLEAQGVPPAEREKRADAMLDL 125 Query: 113 -------GHYLREPVKTYSTGMRARLAFAISMAVEFDCFLIDEVITVGDARFQTKCRH-- 163 G RE S GM+ R+ A + D L+DE + D R Sbjct: 126 IGLAGFGGALPRE----LSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDI 181 Query: 164 -ELFEKRR--DRSFVIVSHEVHNIRDYCERVLVL 194 E++E+ R + +IVSH + +R++VL Sbjct: 182 LEMWEENRIPTKGILIVSHNIEEAVMMSDRIVVL 215 >gi|152980901|ref|YP_001351950.1| ABC transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 579 Score = 67.0 bits (162), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 111/223 (49%), Gaps = 29/223 (13%) Query: 1 MIKLNQVSKSYFTRHGERLI-LDSVEATVQRGEKVGVLGRNGAGKSTLIRLLGGVEHPSS 59 ++++N ++K +F G R + + V +++GE VG++G +G+GK+TL R++ G+E P+ Sbjct: 302 VVEVNNLTKVFFGPDGSRRVAVSEVSFALRKGETVGIVGESGSGKTTLTRMVLGLETPNV 361 Query: 60 GSIVRRMNISWPLAFGG----------AFQGSLSGLDNFRFICRI----YGLSHHDRLAQ 105 G++ R + L+ FQ L+ D + R+ G++ + + Sbjct: 362 GNVRLRDQVWSDLSDAQQRAERKRIQVVFQDPLASFDPRYTVERVLFEALGVAGYTDTEK 421 Query: 106 VEDFA-ELGH-------YL-REPVKTYSTGMRARLAFAISMAVEFDCFLIDEVITVGDAR 156 A EL H YL R P++ S G R R+A A ++A E + + DE ++ D Sbjct: 422 TRARAIELLHLVRLDQSYLQRRPIE-LSGGQRQRIAIARALAPEPEVLICDEPVSALDVS 480 Query: 157 FQTKCRHELFEKRRDR---SFVIVSHEVHNIRDYCERVLVLHD 196 Q + +L +DR S + +SH++ I +R+LV+ D Sbjct: 481 VQAQI-LDLLIDLKDRLGLSCLFISHDLGVIYRVSDRILVMKD 522 >gi|152980457|ref|YP_001355073.1| ABC-2 type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 310 Score = 66.2 bits (160), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 26/211 (12%) Query: 12 FTRHGERL-ILDSVEATVQRGEKVGVLGRNGAGKSTLIRLLGGVEHPSSGSIVRRMNISW 70 F R+G ++D + ++RGE G+LG NGAGK+T +RL G+ P SGSI ++ + Sbjct: 16 FGRNGSGTKVIDGLSFALRRGECYGLLGPNGAGKTTTLRLCLGLTAPDSGSIT-LVDHAI 74 Query: 71 P------------LAFGGAFQGSLSGLDNFRFICRIYGLSH---HDRLAQVEDFAELGHY 115 P + G + +N R +G+ R+ + +FA L + Sbjct: 75 PAHAREARARVGVVPQGDNLDPDFTVEENLLVFGRYFGIPDKTIQARIPSLLEFANLTNK 134 Query: 116 LREPVKTYSTGMRARLAFAISMAVEFDCFLIDEVITVGDARFQTKCRHELFEK-----RR 170 + S GMR RL A ++ + D +DE T D + RH ++E+ R Sbjct: 135 KDAQIGELSGGMRRRLTLARALVNDPDLIFMDEPTTGLDP----QARHMIWERLKALLAR 190 Query: 171 DRSFVIVSHEVHNIRDYCERVLVLHDRKLLA 201 ++ + +H + C+R+ V+ KL+A Sbjct: 191 GKTIFLTTHFMDEAERLCDRLAVMDYGKLIA 221 >gi|152982345|ref|YP_001352956.1| ABC-type transport system, involved in lipoprotein release, ATPase component [Janthinobacterium sp. Marseille] Length = 228 Score = 66.2 bits (160), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 22/206 (10%) Query: 20 ILDSVEATVQRGEKVGVLGRNGAGKSTLIRLLGGVEHPSSGSIV------------RRMN 67 +L V + +GE+V ++G +G+GKSTL+ LLGG++ PS+GS+ +R + Sbjct: 24 VLKDVNLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPSAGSVTLLNQDFATLDEKKRGD 83 Query: 68 I-SWPLAFGGAFQGSL---SGLDNFR---FICRIYGLSHHDRLAQVEDFAELGHYLREPV 120 + + L F F L S LDN I R+ H++ + L H + Sbjct: 84 LRNKSLGFVYQFHHLLPEFSALDNVAMPLMIRRVPRSEAHEKARAILARVGLEHRVTHVP 143 Query: 121 KTYSTGMRARLAFAISMAVEFDCFLIDEVITVGDARFQTKCRHELFEKRRD--RSFVIVS 178 S G R R+A A ++ + C L DE D K + E R +F+IV+ Sbjct: 144 GELSGGERQRVALARALVTQPACVLADEPTGNLDRVTAHKTFDLMLELSRTLGTAFIIVT 203 Query: 179 HEVHNIRDYCERVLVLHDRKLLAFSE 204 H+V + +C+R++ L D L +++ Sbjct: 204 HDV-ELATHCDRIMRLSDDGLHPYTD 228 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.141 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 488,794 Number of extensions: 20388 Number of successful extensions: 210 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 16 Length of query: 216 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 137 Effective length of database: 928,958 Effective search space: 127267246 Effective search space used: 127267246 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 127 (53.5 bits)