BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4072.p
         (384 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980090|ref|YP_001351811.1| 8-amino-7-oxononanoate synthase...   157   1e-39

>gi|152980090|ref|YP_001351811.1| 8-amino-7-oxononanoate synthase
           [Janthinobacterium sp. Marseille]
          Length = 394

 Score =  157 bits (397), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 199/366 (54%), Gaps = 20/366 (5%)

Query: 30  QINGKEYINFSSYNYLGLAGDAQVNRAAKEAIDRYGTSASASRLVAGERPIQRELEQALA 89
           Q++G+  + F S +YLGLA   ++  A ++    YG  + AS L++G      ELE+ LA
Sbjct: 36  QVDGRAMLAFCSNDYLGLAAHPRIIDALQQGASLYGAGSGASHLISGHSRAHAELEERLA 95

Query: 90  QHY--QVQDC--LVFVSGHATNVTTIGQLFGPRDLVIHDSLIHKSVLDGIKLSGAARRSF 145
           +    Q+ D   L F +G+  N+  +  L G    +  +SL H S++DG +LS A  + +
Sbjct: 96  EFVAPQIADARALYFCTGYMANIAILSALSGSGADLFSESLNHASLIDGARLSRANVQVY 155

Query: 146 AHNDMAALERILEEVRNSFELVLIVVEGHYSMDGDIPDLPALIRIKQRHACLLMVDEAHS 205
            H D+  L  +L    ++ +  ++V +  +SMDGD+  LP L+ + ++H   L+VD+AH 
Sbjct: 156 PHGDLDKLAILL--AASTADNKMVVTDSVFSMDGDLAALPQLLALCEQHGAWLVVDDAHG 213

Query: 206 LGVLGTTGKGLHEHFGLPGSEVDIWMGTLSKTLAGCGGYIAGSTALVEHLKYAASGFVYS 265
            GVLG  G+G+ EHF L    + ++MGTL K     G ++A   +++E +   A  ++Y+
Sbjct: 214 FGVLGEHGRGVLEHFALRSPNL-VYMGTLGKAAGVAGAFVAAHKSVIEWMVQRARPYIYT 272

Query: 266 VGIAPALAAASLTALHLM--TTQSERTASL-----RHNAGLLLETARQAGLDTGSSLGLS 318
               PA+A A LT+L ++     +ER A L     +  + L L+  R    DT      +
Sbjct: 273 TAAPPAVAHALLTSLEIIGGAEGAERRAHLQTLIAQWRSALQLQRWRALASDT------A 326

Query: 319 IIPIITGSSTKAVRLSNQLHQRAINVQPIIYPAVEEKTARLRLFVSAQHTRQQICHTIAV 378
           I P++ G++  A++++  L+++ I V  I  P V   TARLR+ +SA HT +Q+   +  
Sbjct: 327 IQPVVIGANDVAMKIAAALYEQNIWVPAIRPPTVPAGTARLRVTLSAAHTAEQVTQLVGA 386

Query: 379 IKELSR 384
           +++L +
Sbjct: 387 LQQLEQ 392


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 779,533
Number of extensions: 30301
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 299
Effective length of database: 906,776
Effective search space: 271126024
Effective search space used: 271126024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)