BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4068.p (271 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983365|ref|YP_001354856.1| integrase [Janthinobacterium sp... 72 4e-14 gi|152983145|ref|YP_001352184.1| phage integrase family site spe... 65 3e-12 >gi|152983365|ref|YP_001354856.1| integrase [Janthinobacterium sp. Marseille] Length = 325 Score = 72.0 bits (175), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 28/239 (11%) Query: 35 KARTGVCPATINRMLSLIRAVLNVAQREWGWIEEPPFIRL-LAEPRSRIRFLSRDEAAKL 93 ++ +G+C TI L L+R A + + + F +L +A+P +RFLS E + L Sbjct: 75 RSDSGICNQTILHNLGLVRGTWKFASKLGYQVSQLEFPQLKIAKPP--VRFLSDVEESNL 132 Query: 94 L------RELP----------------EHLSDMAAFSLATGLRKTNVTGLEWSQVDMRRG 131 L RE P + D+A L TG R + + +EW+++DM Sbjct: 133 LVSLDPRREGPGLAPLNERSERIQQMLQDSYDLAVILLDTGGRYSEIANIEWTRIDMDAR 192 Query: 132 VAWVHHDQMKNRCALAVPLNQDALAILASRLRRHPRFVFTYKGERILQTSTAAWYKALKR 191 + ++ N L + + IL R + + R+VF K ST + KA+K+ Sbjct: 193 TINLWRTKVSN--GLILHMTDRVYQILLRR-QGNGRYVFQNKAGGARGYSTQSIRKAIKK 249 Query: 192 CRIHNFRWHDLRHTWASWHVQGGTPLHVLQELGGWRTYDMVLRYAHFSADHLAAYARNL 250 + R H RHT A+ ++ G L+ ++E+ G + + YAH + A ARNL Sbjct: 250 TGLEGCRVHSFRHTLATRLLRSGMNLYEVKEILGHAKIETTMTYAHLELNETAIKARNL 308 >gi|152983145|ref|YP_001352184.1| phage integrase family site specific recombinase [Janthinobacterium sp. Marseille] Length = 328 Score = 65.5 bits (158), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 16/244 (6%) Query: 9 RWLHPHLAHVSLSDIDRDVVRALRDCKARTGVCPATINRMLSLIRAVLNVAQREWGW--- 65 RW LA +++ + + RD + G+ T+ L+LI V VA ++WG Sbjct: 88 RWQSNPLAQLTMPQLRAAELAKYRDQRLSDGLGANTVRLELALISHVYEVAIKDWGLEVL 147 Query: 66 IEEPPFIRLLAEPRSRIRFLSRDEAAKLLRELPEH----LSDMAAFSLATGLRKTNVTGL 121 I IR PR R R L+ E LL + L + +L T +R+ + L Sbjct: 148 INPVRIIRKPKLPRGRERRLTEGEEDLLLEYCKKKGAALLRLVIILALETAMRRGEIASL 207 Query: 122 EWSQVDMRRGVAWVHHDQMKNRCALAVPLNQDALAILASRL-RRHPRFVFTYKGERILQT 180 +D+ + ++ DQ KN VPL++ A L + L +H V + Sbjct: 208 HTENIDLDSRLIFL--DQTKNGDKRKVPLSRRAQKELENYLCGKHGELVPLHP-----DN 260 Query: 181 STAAWYKALKRCRIHNFRWHDLRHTWASWHVQGGTPLHVLQELGGWRTYDMVLRYAHF-S 239 + A+ +A K C I HDLRH S + G + + + G +T M+ RY H + Sbjct: 261 ISGAFSQACKVCGISGLTLHDLRHEATSRLFEKGFNMMEVAAITGHKTLTMLKRYTHLDT 320 Query: 240 ADHL 243 AD L Sbjct: 321 ADFL 324 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.136 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 653,449 Number of extensions: 25388 Number of successful extensions: 109 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 107 Number of HSP's successfully gapped: 2 Length of query: 271 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 189 Effective length of database: 917,867 Effective search space: 173476863 Effective search space used: 173476863 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)