BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4067.p
         (287 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983187|ref|YP_001353470.1| hypothetical protein mma_1780 [...   124   5e-30

>gi|152983187|ref|YP_001353470.1| hypothetical protein mma_1780
           [Janthinobacterium sp. Marseille]
          Length = 300

 Score =  124 bits (312), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 129/225 (57%), Gaps = 30/225 (13%)

Query: 33  TLTVTEFPNG-VEVFLDENRETYSDGQIFDYSTECEEPTKRGEGDH-ERARIVAARRAKT 90
           TL    FP+G +EV + +++  ++   +  + T     TKRGE +  ER   VA  +AK 
Sbjct: 42  TLRHKTFPDGQMEVSVTKDKH-FNGAALSPFPTN---RTKRGESEERERNDRVAGNKAKQ 97

Query: 91  KVRRLAKMLQADCLLTLTYRECVTDYARVEADFKAFRERLRSVGD-FHYVATLEVQKRGA 149
            VR   K + AD L+TLTYRE +TD       +K F  RLR V   FHYVA +E QKRGA
Sbjct: 98  TVRDRCKQIGADRLVTLTYRENLTDRELALKHWKEFTRRLRKVQHAFHYVAVMENQKRGA 157

Query: 150 LHVHIACQQFPAWLQNEHGVRVRSWNLIRSMWRRVVGKDN-----GNVNFTRPR----GR 200
           +H HIA           HG +  ++ L+RS+W+RV+GK+      G VN   P     G+
Sbjct: 158 IHFHIAV----------HGRQ--NYQLLRSIWQRVLGKNEAGQQMGQVNVRDPHRFGFGK 205

Query: 201 NSAHRIASYISKYVSKNLEEARFNKKSYWASRGIPKPS--QYKIY 243
           N  H++A+YI+KY +K ++    ++K +++SRGIPKP   Q++++
Sbjct: 206 NGIHKLAAYIAKYCTKAMDCREIDQKRFFSSRGIPKPEVVQWRLH 250


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 613,924
Number of extensions: 22935
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 205
Effective length of database: 917,867
Effective search space: 188162735
Effective search space used: 188162735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)