BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4060.p
         (107 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983255|ref|YP_001353474.1| hypothetical protein mma_1784 [...    64   2e-12

>gi|152983255|ref|YP_001353474.1| hypothetical protein mma_1784
           [Janthinobacterium sp. Marseille]
          Length = 102

 Score = 63.9 bits (154), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 7/102 (6%)

Query: 7   KHLIEIVSVQESSGVSRKTGNPWKMYRAQCV--VTGGDNGAK--VGELLLPDSLKDTTPG 62
           K LI+I+ V++++G S+KTGN + M  AQ V  VT  D   +  VGEL+LP+  KD  PG
Sbjct: 2   KTLIQILYVKQNAGTSKKTGNAYDMRMAQTVAQVTNKDGIVEPLVGELMLPEQYKDAVPG 61

Query: 63  KYLAEFQLDVSFERLVVPRITALHPHG--GGAARPQAKPAAS 102
            YL +F+L  S +  +   +  L P    G   RP A+P A+
Sbjct: 62  HYLIDFRLSRSQQNRIESVVDTLMPCDAKGNPVRP-AEPKAA 102


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 214,560
Number of extensions: 7981
Number of successful extensions: 12
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 37
Effective length of database: 962,231
Effective search space: 35602547
Effective search space used: 35602547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)